SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22551

Length: 2530 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22551
TGTATCGACCTTGGCTGTCACTCAACTGTAGAGAAAGGTGTGACGAGATAGTCAAGCTGTGCCAATTTGAAGCAGCGTGGTGACCGGCTGTCACTCTATTATTCAGTAAGTTGTGTGAGCAATCATTCTACAAATAACTGTTGTACGGACCAGAGAGCTTGCCACTGAGCTTATCAGTGTCCTCGGCGAGGTGTGCATGCTCATAACCCTCGTTTGACGTTGAACACATTTTACAGTTATTATCAGCTGTGAATCCCTTTTGTCTCAGGGCATAACGGAGTACAGGAAGGGAGGTAGAATTTCACAGGAGTCGGAGGAAAGTTTGTTGGGGAAAAACTCACTGGGAGGGAAGGGCACAATCAGGACACGGAGGGAAGTTTTATGTTTGGGTGAAATTCACCGTGAGACACCTTGGTTACAGGAAGAGATTGTTCTGTGAGGGATAGACATAATTGAACCGCGGCTGCACAGAACAAAGGGGTTTTTGACTCTTTGACGCGTGTTAAGTTTGAGTTATCAGTGTCCTCGGCGAGGCGTGTCCGAATAGGACCTCGTTTCGACATAATCCTCTCAGTTCAAGGCGGAAAAGGCGGGGGAGAAAAAACTGAGGACCGGCCGGGATACAGAAGGAGCACGACCTGAGAGAGGGCGATTCTGACTCTTTGTGGCGCCTCAGAGGAAATGGCCGGGATGAATAATATTGTTTTTGGCGACTCGATGTAAGGCTTGCAAGAAAAACCCTGTTGAGGTTTTGTGCCAGTGGATGCCATTCACCTCGAAAGAGGCCGAATTAGGGCTGATAATGCAATTGTCGAACCCAAAGGGTATTCCTCCTTTCATGAGTCCGAGCAGCATTTGGGGTTACTCTGGAATTTTCATTTTTTAACTTGTAGTTCAATCCTTTTCTTCCAGGCCGAATTAGTTATCATTGAGGCCAGAGTTCTCCTCACTTCAGGCTGAATATTTCTTGGACCACCACCTTCTCTAGTAGCTGAATCTTGCAGGGGTCGAAGTCTGTTTTTGAAGACCAGATTGCAGCCTATTACCCAGCCAAATCAGGCCTTGTTGTTGTGTTGCTACAAGTGACAATATTTAAGTATTGACCAGGGTGAAGAGATGCCACAACCGTCAGTTATCCTTGCAACAGCAGGTTATGATCACACAGTAAGGTTTTGGGAAGCCACTAGTGGTCGCTGCTATCGGACTCTTCAGTACCCTGATTCACAAGTCAATCATCTAGAGATAACACCTGACAAGCAGTACTTGGCTGCAGCTGGGAATCCACATATTCGTTTATTTGAAGTCAATTCCAATAATCCTCAACCTGTAATTAGTTATGACTCCCACACAAACAATGTTACGGCAGTGGGATTCCAGTGTGATGGAAAATGGATGTACTCAGGTTCAGAAGATGGTACTGTGAAGATATGGGATCTGAGAGCTCCAGGTTTCCAGAGGGAGTATGAAAGTCGGGCTGCTGTTAATACTGTTGTCTTGCATCCAAATCAGACAGAATTGATATCAGGAGACCAAAATGGAAATATTCGTGTGTGGGATCTCAATGCAAATTCTTGCAGTTGTGAACTGGTTCCAGAGGATACAGCTGTAAGATCATTGACAGTTATGTGGGATGGAAGTCTGGTTGTAGCTGCAAATAATCATGGAACATGCTATGTTTGGAGGTTGATGCGTGGAACACAGACAATGACGAACTTCGAGCCATTGCATAAGCTTCAAGCACATAATTCATACATTCTGAAATGTCTTCTTTCACCTGAGTTCTGTGAACATCATCGGTATTTGGCAACAACATCATCTGACCAAACTGTAAAGATATGGAATGTTGATGGCTTCACTCTGGAGCGTACACTAACAGGACATCAACGTTGGGTTTGGGATTGCGTATTTTCTGTTGATGGAGCTTTCCTTGTTACTGCTTCCTCAGATTCATCTGCAAGACTGTGGGACCTATCAACTGGAGAAGCCATCAGAACATATCAAGGGCATCATAAGGCGACTGTATGCTGTGCTCTGCATGATGGCGCAGATGGTGCTTCAAGCTGATGCCTTGTTTGTATGTCCAATAGATTATAACCTATTTACTTGCGACACTATTCTTCACACCCATGTCAATTGTCCAATGTAGCATGCCCCACACCTTGTACAGAATTGTTAGAGCAAGTTGTACTTCAGGTCATAGAGTTGTTTTTCACTTATTATTTTAAGTGTCATTAGATTAATATGAAAGATTGTAGGCTAGCTGTGATGGACATTAGGAGAGAAATCTTTTGCCATGGGGCTACTTTTCCAGTGGAAGTTAACTCATTTGTTGCAACACTGCCTATCTTGCATTTTCTACGTTGTAAATATCTGAGTGAATTTGTGTAGGAAATAACATTTTCAGGTAGATTGATGCTTAATGTTTGTTAGTTGACAATTGGCAGCTAACTTAAGAAAGAAGAGCTACAATGGCAAGTGTCTGCAATCTTGTCATAGGATATGTATAAATGATCACGAGATTAATTCTAGG

Ace file of the UniGene sp_v1.1_unigene22551

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative (EC:2.7.11.7); K08266 G protein beta subunit-like	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	transducin family protein	-	-	91%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	91%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	91%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	91%
Blast2go	WD40-repeat-containing domain	IPR017986	-	91%
Blast2go	WD40 repeat, conserved site	IPR019775	-	91%
Blast2go	WD40 repeat, subgroup	IPR019781	-	91%
Blast2go	WD40 repeat 2	IPR019782	-	91%
Blast2go	G-protein beta WD-40 repeat	IPR020472	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUE8

Fln msg:

Fln protein: MPQPSVILATAGYDHTVRFWEATSGRCYRTLQYPDSQVNHLEITPDKQYLAAAGNPHIRLFEVNSNNPQPVISYDSHTNNVTAVGFQCDGKWMYSGSEDGTVKIWDLRAPGFQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLNANSCSCELVPEDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNSYILKCLLSPEFCEHHRYLATTSSDQTVKIWNVDGFTLERTLTGHQRWVWDCVFSVDGAFLVTASSDSSARLWDLSTGEAIRTYQGHHKATVCCALHDGADGASS*

Protein Length: 317

Fln nts: TGTATCGACCTTGGCTGTCACTCAACTGTAGAGAAAGGTGTGACGAGATAGTCAAGCTGTGCCAATTTGAAGCAGCGTGGTGACCGGCTGTCACTCTATTATTCAGTAAGTTGTGTGAGCAATCATTCTACAAATAACTGTTGTACGGACCAGAGAGCTTGCCACTGAGCTTATCAGTGTCCTCGGCGAGGTGTGCATGCTCATAACCCTCGTTTGACGTTGAACACATTTTACAGTTATTATCAGCTGTGAATCCCTTTTGTCTCAGGGCATAACGGAGTACAGGAAGGGAGGTAGAATTTCACAGGAGTCGGAGGAAAGTTTGTTGGGGAAAAACTCACTGGGAGGGAAGGGCACAATCAGGACACGGAGGGAAGTTTTATGTTTGGGTGAAATTCACCGTGAGACACCTTGGTTACAGGAAGAGATTGTTCTGTGAGGGATAGACATAATTGAACCGCGGCTGCACAGAACAAAGGGGTTTTTGACTCTTTGACGCGTGTTAAGTTTGAGTTATCAGTGTCCTCGGCGAGGCGTGTCCGAATAGGACCTCGTTTCGACATAATCCTCTCAGTTCAAGGCGGAAAAGGCGGGGGAGAAAAAACTGAGGACCGGCCGGGATACAGAAGGAGCACGACCTGAGAGAGGGCGATTCTGACTCTTTGTGGCGCCTCAGAGGAAATGGCCGGGATGAATAATATTGTTTTTGGCGACTCGATGTAAGGCTTGCAAGAAAAACCCTGTTGAGGTTTTGTGCCAGTGGATGCCATTCACCTCGAAAGAGGCCGAATTAGGGCTGATAATGCAATTGTCGAACCCAAAGGGTATTCCTCCTTTCATGAGTCCGAGCAGCATTTGGGGTTACTCTGGAATTTTCATTTTTTAACTTGTAGTTCAATCCTTTTCTTCCAGGCCGAATTAGTTATCATTGAGGCCAGAGTTCTCCTCACTTCAGGCTGAATATTTCTTGGACCACCACCTTCTCTAGTAGCTGAATCTTGCAGGGGTCGAAGTCTGTTTTTGAAGACCAGATTGCAGCCTATTACCCAGCCAAATCAGGCCTTGTTGTTGTGTTGCTACAAGTGACAATATTTAAGTATTGACCAGGGTGAAGAG_-_ATGCCACAACCGTCAGTTATCCTTGCAACAGCAGGTTATGATCACACAGTAAGGTTTTGGGAAGCCACTAGTGGTCGCTGCTATCGGACTCTTCAGTACCCTGATTCACAAGTCAATCATCTAGAGATAACACCTGACAAGCAGTACTTGGCTGCAGCTGGGAATCCACATATTCGTTTATTTGAAGTCAATTCCAATAATCCTCAACCTGTAATTAGTTATGACTCCCACACAAACAATGTTACGGCAGTGGGATTCCAGTGTGATGGAAAATGGATGTACTCAGGTTCAGAAGATGGTACTGTGAAGATATGGGATCTGAGAGCTCCAGGTTTCCAGAGGGAGTATGAAAGTCGGGCTGCTGTTAATACTGTTGTCTTGCATCCAAATCAGACAGAATTGATATCAGGAGACCAAAATGGAAATATTCGTGTGTGGGATCTCAATGCAAATTCTTGCAGTTGTGAACTGGTTCCAGAGGATACAGCTGTAAGATCATTGACAGTTATGTGGGATGGAAGTCTGGTTGTAGCTGCAAATAATCATGGAACATGCTATGTTTGGAGGTTGATGCGTGGAACACAGACAATGACGAACTTCGAGCCATTGCATAAGCTTCAAGCACATAATTCATACATTCTGAAATGTCTTCTTTCACCTGAGTTCTGTGAACATCATCGGTATTTGGCAACAACATCATCTGACCAAACTGTAAAGATATGGAATGTTGATGGCTTCACTCTGGAGCGTACACTAACAGGACATCAACGTTGGGTTTGGGATTGCGTATTTTCTGTTGATGGAGCTTTCCTTGTTACTGCTTCCTCAGATTCATCTGCAAGACTGTGGGACCTATCAACTGGAGAAGCCATCAGAACATATCAAGGGCATCATAAGGCGACTGTATGCTGTGCTCTGCATGATGGCGCAGATGGTGCTTCAAGCTGA___TGCCTTGTTTGTATGTCCAATAGATTATAACCTATTTACTTGCGACACTATTCTTCACACCCATGTCAATTGTCCAATGTAGCATGCCCCACACCTTGTACAGAATTGTTAGAGCAAGTTGTACTTCAGGTCATAGAGTTGTTTTTCACTTATTATTTTAAGTGTCATTAGATTAATATGAAAGATTGTAGGCTAGCTGTGATGGACATTAGGAGAGAAATCTTTTGCCATGGGGCTACTTTTCCAGTGGAAGTTAACTCATTTGTTGCAACACTGCCTATCTTGCATTTTCTACGTTGTAAATATCTGAGTGAATTTGTGTAGGAAATAACATTTTCAGGTAGATTGATGCTTAATGTTTGTTAGTTGACAATTGGCAGCTAACTTAAGAAAGAAGAGCTACAATGGCAAGTGTCTGCAATCTTGTCATAGGATATGTATAAATGATCACGAGATTAATTCTAGG

Fln Alignment:

sp_v1.1_unigene22551___MPQPSVILATAGYDHTVRFWEATSGRCYRTLQYPDSQVNHLEITPDKQYLAAAGNPHIRLFEVNSNNPQPVISYDSHTNNVTAVGFQCDGKWMYSGSEDGTVKIWDLRAPGFQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLNANSCSCELVPEDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNSYILKCLLSPEFCEHHRYLATTSSDQTVKIWNVDGFTLERTLTGHQRWVWDCVFSVDGAFLVTASSDSSARLWDLSTGEAIRTYQGHHKATVCCALHDGADGASS
A9NUE8_______________MPQPSVILATAGYDHTVKFWEATSGRCYRTLQYPDSQVNHLEITPDKQYLAAAGNPHIRLFEVNSSNPQAVISYDSHTNNVTAVGFQCDGKWMYSGSEDGTVKIWDLRAPGFQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLNANSCSCELVPEDTAVRSLTVMWDGSLVVAANNNGTCYVWRLMRGTQTMTNFEPLHKLQAHNSYILKCLLSPEFCEHHRYLATTSSDQTVKIWNVDGFTLERTLTGHQRWVWDCVFSVDGAFLVTASSDSTARLWDLSTGEAIRVYQGHHKATVCCALHDGADGASS

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
1534	85		14		0.993533
1552			10	90	0.90298
1553		90	10		0.90298
1752	87	12			0.992554
1753			12	87	0.992554
1756	87		12		0.992554
1760	87	12			0.992554
1764			12	87	0.992554
1766	87	12			0.992554
1767	87			12	0.992554
1768	87		12		0.992554
1770		12	87		0.992554
1771	12			87	0.992554
1774		12		87	0.992554
1775	12	87			0.992554
1968		16		83	0.999991
2079			16	83	0.994512
2080			16	83	0.994512
2081			16	83	0.994512
2082			83	16	0.994512
2119		83		16	0.994512
2206	85		14		0.993533
2221			14	85	0.993533
2223	85	14			0.993533
2224			14	85	0.993533
2227		14		85	0.993533
2228		14		85	0.993533
2231	85		14		0.993533
2232	85		14		0.993533
2233		14	85		0.993533
2237		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain