SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22548

Length: 1362 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22548

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cysteine proteinase C1A n=1 Tax=Dactylis glomerata RepID=D0VEB8_DACGL	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	cysteine proteinase	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase, cysteine peptidase active site	IPR000169	-	75%
Blast2go	Peptidase C1A, papain C-terminal	IPR000668	-	75%
Blast2go	Peptidase C1A, papain	IPR013128	-	75%
Blast2go	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMA7

Fln msg:

Fln protein: MTSVSKAIVLLFLAALLILSAKASDSSPGFTDEDLKSEESLRGLYDKWALQHRSTRSLDSDEHAKRFEIFKENVKYIDSVNKQDGTYKLGLNKFADLSNEEFKAMHMTTTMENHRSLRRDRGVQSGSFMYQNTKHLPVSIDWRKKGAVTPVKNQGQCGSCWAFSTVASVEGINYIKTGKLVSLSEQQLVDCSKENAGCNGGLMDNAFQYIIDNGGIVSEEEYPYTAEASECSTSKIESTKTTTVIDGFEDVPANNEAALKKAVAHQPVSVAIEASGQDFQFYSTGVFTGKCGTKLDHGVVVVGYGKSPEGINYWIVRNSWGPEWGEKGYIKMQRGIEAVEGKCGIAMQASYPTKKTRDVDIELDVDHVSDEL*

Protein Length: 374

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCAATTCTCATTATTTCTCTGCATACTTCTGTGAGTTTGACTGTTTTTTCGTA_-_ATGACGAGTGTTTCAAAGGCAATCGTGTTACTGTTCCTTGCGGCTTTGTTGATTTTATCAGCGAAAGCTTCAGATTCTTCCCCTGGATTTACAGATGAAGACCTCAAGTCTGAGGAAAGTCTTCGAGGGCTTTATGATAAATGGGCGCTTCAGCATCGGTCCACCAGAAGTTTGGATTCAGATGAGCATGCCAAACGATTCGAGATATTCAAAGAGAATGTAAAATACATCGACTCCGTGAATAAGCAGGATGGTACATACAAGCTTGGATTGAATAAATTTGCAGATCTGAGTAACGAAGAATTCAAAGCCATGCATATGACAACCACGATGGAGAACCACAGGAGTTTGCGCAGAGACAGAGGAGTGCAGAGTGGATCATTCATGTATCAAAATACGAAGCATTTGCCAGTATCTATTGATTGGAGAAAAAAGGGAGCGGTTACTCCGGTGAAGAATCAAGGGCAATGCGGAAGTTGTTGGGCATTTTCAACCGTAGCTTCTGTAGAGGGCATTAACTATATCAAAACAGGGAAACTGGTTTCTTTATCAGAGCAACAGTTGGTAGATTGCAGTAAAGAGAACGCAGGTTGCAACGGAGGGCTTATGGATAACGCCTTCCAATATATCATAGATAATGGCGGGATCGTTAGTGAAGAAGAGTATCCTTACACTGCCGAAGCGAGCGAGTGCAGTACCTCCAAGATTGAATCAACAAAAACAACAACAGTTATTGATGGCTTTGAGGATGTCCCTGCTAACAATGAAGCCGCACTCAAGAAAGCTGTGGCTCATCAACCTGTGTCTGTAGCCATCGAAGCAAGTGGTCAAGATTTCCAGTTTTATTCAACTGGAGTATTCACTGGTAAATGTGGCACCAAACTTGACCATGGAGTCGTAGTGGTTGGCTATGGCAAGTCTCCTGAAGGAATCAATTACTGGATAGTTAGGAACTCTTGGGGACCTGAATGGGGAGAAAAGGGGTATATAAAAATGCAACGAGGTATTGAAGCAGTGGAAGGAAAGTGTGGTATAGCCATGCAAGCTTCATATCCGACCAAGAAAACTCGAGATGTTGATATTGAATTGGACGTTGATCACGTTAGCGATGAATTGTAA___AAATTGTCATAACAAAATGTTGATATTATAAGATTTAATAATGTGAAGATTTGTTCTTCATTTAGAAGCCAAATTTGGTTATTAAATTATACTATTGTTTGTAGGTATTTCATATTTTTGTATTAGATTATTATTTTTATTAACAAGAATAGTATATTTTGTATT

Fln Alignment:

sp_v1.1_unigene22548___MTSVSKAIVXXXXXXXXXXXXXXXXXXPGFTDEDLKSEESLRGLYDKWALQHRSTRSLDSDEHAKRFEIFKENVKYIDSVNKQDGTYKLGLNKFADLSNEEFKAMHMTTTMENHRSLRRDRGVQSGSFMYQNTKHLPVSIDWRKKGAVTPVKNQGQCGSCWAFSTVASVEGINYIKTGKLVSLSEQQLVDCSKENAGCNGGLMDNAFQYIIDNGGIVSEEEYPYTAEAXXXXXXXXXXXXXXXVIDGFEDVPANNEAALKKAVAHQPVSVAIEASGQDFQFYSTGVFTGKCGTKLDHGVVVVGYGKSPEGINYWIVRNSWGPEWGEKGYIKMQRGIEAVEGKCGIAMQASYPTKKTRDVDIELDVDHVSDEL
B8LMA7_______________MASVSKAALLLFLAALWTLSANALDSSPGFTDEELESDESLRGLYDKWALQHRSTRSLDSDEHARRFEIFKENVKHIDSVNKKDGPYKLGLNKFADLSNEEFKAMHMTTKMEKHKSLRGDRGVESGSFMYQNSKRLPASIDWRKKGAVTPVKNQGQCGSCWAFSTIASVEGINYIKTGKLVSLSEQQLVDCSKENAGCNGGLMDNAFQYIIDNGGIVTEDEYPYTAEAGECSTTKIESKSIATIIDGFEDVPANNEGALKKAVAHQPVSIAIEASGHDFQFYSTGVFTGKCGTELDHGVVVVGYGKSPEGINYWIVRNSWGPEWGEQGYIRMQRGIEATEGKCGISMQASYPTKKTQDVDIELDVDHISDEL

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
406		92		2	0.993509
508	78		7		0.999999
511	92		7		0.90298
514	7		92		0.90298
560		7		92	0.90298
574		92		7	0.90298
575	7		92		0.90298
602	90	9			0.993475
607	90		9		0.993475
703	88		11		0.995414
921		9		90	0.991528
922			9	90	0.991528
924	90	9			0.991528
925			9	90	0.991528
927		90	9		0.991528
929	90	9			0.991528
932			90	9	0.991528
936		9		90	0.991528
937	90			9	0.991528
938			9	90	0.991528
944	8		91		0.90298
1104	90		10		0.90298
1156		3		96	0.972116
1180		55		44	1.0
1245	94	5			0.981958
1272	12			87	0.993502
1273	12			87	0.993502
1274	12			87	0.993502
1275	12		87		0.993502

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain