SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22537

Length: 2128 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22537
CGTCGTGACCTTGGCTGTCACTCAGTCTCTGGCTTTTGCTCAGCTATTCCTTCGCGGTGGTCGGCGAATAAAATTTCCCGTTTGACGTTGAAAGATTTGATTAAAAAATAATACATAAAATAGTCATACGTAATTGCTTCAGATCATGATTTCCTTTTCCCACTTCTTAAGTAGCTCACCGAATCGGGGAGGAGCTGGTATGATCCGTGTGAGTTTCATTCCCCTTATACTGGCTACCTACGCGGAAACATTATACGGAAGCCCGATTTTGTCCGTATCAGGATTCGACCTGTGGTCGGCTTCTTAATGAACTTCTGTGAAATAGGCTAGCAGCTGTTTGCAGGGGGGATTTATAGCGTTTGTGTTTTGCACTAAAGGATCACGCGGTAGCGATCAGTAATATCATATGTAGAGAATGCGTAGGGGTTGCTGCAATGGGTGGACCTCCGGGTTCCTGGATTCGACTGTTAATCGACTTCTGAAGAAGTATGAATGGCGTCTTTGGTTGGACGGGGGTTTCCATTTGTCGCCGAGGATTAAAGGAATGAAATTAAGGAGGTACCTGGCTCGATTCCGGGCGCAGGCTTCGAGATGGCGGTGGAAGGCTTGGCCAAGGCAGATATGGCCGAGCGATAAAGGCCCGGAGTTTCATGATACTCCTGGGGTTATCCTAACTAAGCTGAATCCTGGAAAATTTAGCCCTGATAACCCCAGGGTTTTCAGCTATGCGGAGCTCTACATCGCCACCAAGGGTTTCTGCAAGGATGAGCTGCTCGGAAGCGGGGGTTTCGGTCGGGTTTACAAGGCGGTTTTGCCCAGCGATGGCTCTATTGTGGCCGTGAAATGTCTTTCCGAGAACGGCGAGCGCAGCAGCCTGGAGAAGACCTTTGAGGCCGAGCTCGCGGCCGTTGGGCAGCTGCGGCACAAGAATCTGGTGTCGCTCAAGGGCTGGTGCTTTGAAGAACAAGAACTTCTTTTGGTCTATGATTACATGCCTAATTCCAGCCTCGACAAGATTTTATTCGTCCGAAATGGCCCGGTTCTTGAATGGCGGAGGCGTTACAAGATCGTTGCGGGGCTCGCCGCGGCGTTATTTTATTTGCATGAGCAGCTGGAAACGCAGATCATTCACAGAGATGTGAAGGCCAGCAATGTGATGCTCGACTCGGGATTTAACGCCCGTCTTGGCGACTTCGGCCTCGCGCGCTGGCTTGAGCATGCCGTCGATCAGGGTTTCCAATTCCATGGAGACGCGCCGGGAAATAAAAGATATAATAACAGTTCCAACAGGCATTTCAGGCTGTCGGAAACGAGCCGAATTGGTGGCACGATCGGGTATGTTTCGCCGGAGAGTTTGCAGAAGCGGAGCAAACCAACGGCAAAATCAGATGTCTTCAGCTTCGGGATCGTGGCACTCGAGGTGGCCTCCGGTCGCCGGGCTATAGATTTAACTTTTCCGGATGAGCAGATCGTGCTGGTGGACTGGATCCGGGTTCTTTACGAGGAAAATAGACTTCTTGAAGCCGGCGACGGCAGGTTACCGGACGGTTATGGCCTTGAAGAAATGAGGCGGTTGCTGCAAATCGGACTTCTTTGCTCCTTAAACGATCCTTCGGCCCGGCCAACGACGAAGTGGATAATCCAGGCATTGGACGGAGACGTAGACGTTCCAGCGTTGCCGTCCTTCAAGGCTCTGCCATACTATGCATCGTTGTCTTCGGAGAGCTCCGAAAGCCTCAGCACCACCACGCAGAGCAATAAAGAAAAGCTATGGTCTGGCTCCTGCAAAGTCCACAGTCCGACCTCAAACAACGATAGCGCTACCTCAATTCGCTCCACGCCAACGGACTACGCTCAGCTTGTAGACGCACCGCGGGAGTTCACGCTACGGGAAATAATCGCTGCAACGGAGAGCTTCGGCGAGGGCAACATGGTTGCCGAGATGGACTTCGGCACGGCCTACCGTGGCGTGCTGCGGGATTCGAACGTGCGAATCTTAGTTAAACGCCTGGGGATGAAAACCTGCCCGGCGCTTCGTGCCCGTTTCGCGCACGAGCTCTCGAACCTCGGGCGCCTGCGCCACCGGAACCTGGTACAGCTCCGGGGCTGGTGCACCGAGAAGGGCGAA

Ace file of the UniGene sp_v1.1_unigene22537

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AP4.3A; AP4.3A; ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	protein	-	-	66%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	66%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	66%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	66%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	66%
Blast2go	Protein kinase-like domain	IPR011009	-	66%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	66%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	66%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	66%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 149 aas, your sequence is longer than subject: 709 - 636

Fln protein: VVTLAVTQSLAFAQLFLRGGRRIKFPV*R*KI*LKNNT*NSHT*LLQIMISFSHFLSSSPNRGGAGMIRVSFIPLILATYAETLYGSPILSVSGFDLWSAS**TSVK*ASSCLQGGFIAFVFCTKGSRGSDQ*YHM*RMRRGCCNGWTSGFLDSTVNRLLKKYEWRLWLDGGFHLSPRIKGMKLRRYLARFRAQASRWRWKAWPRQIWPSDKGPEFHDTPGVILTKLNPGKFSPDNPRVFSYAELYIATKGFCKDELLGSGGFGRVYKAVLPSDGSIVAVKCLSENGERSSLEKTFEAELAAVGQLRHKNLVSLKGWCFEEQELLLVYDYMPNSSLDKILFVRNGPVLEWRRRYKIVAGLAAALFYLHEQLETQIIHRDVKASNVMLDSGFNARLGDFGLARWLEHAVDQGFQFHGDAPGNKRYNNSSNRHFRLSETSRIGGTIGYVSPESLQKRSKPTAKSDVFSFGIVALEVASGRRAIDLTFPDEQIVLVDWIRVLYEENRLLEAGDGRLPDGYGLEEMRRLLQIGLLCSLNDPSARPTTKWIIQALDGDVDVPALPSFKALPYYASLSSESSESLSTTTQSNKEKLWSGSCKVHSPTSNNDSATSIRSTPTDYAQLVDAPREFTLREIIAATESFGEGNMVAEMDFGTAYRGVLRDSNVRILVKRLGMKTCPALRARFAHELSNLGRLRHRNLVQLRGWCTEKGE

Protein Length: 710

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCTCTGGCTTTTGCTCAGCTATTCCTTCGCGGTGGTCGGCGAATAAAATTTCCCGTTTGACGTTGAAAGATTTGATTAAAAAATAATACATAAAATAGTCATACGTAATTGCTTCAGATCATGATTTCCTTTTCCCACTTCTTAAGTAGCTCACCGAATCGGGGAGGAGCTGGTATGATCCGTGTGAGTTTCATTCCCCTTATACTGGCTACCTACGCGGAAACATTATACGGAAGCCCGATTTTGTCCGTATCAGGATTCGACCTGTGGTCGGCTTCTTAATGAACTTCTGTGAAATAGGCTAGCAGCTGTTTGCAGGGGGGATTTATAGCGTTTGTGTTTTGCACTAAAGGATCACGCGGTAGCGATCAGTAATATCATATGTAGAGAATGCGTAGGGGTTGCTGCAATGGGTGGACCTCCGGGTTCCTGGATTCGACTGTTAATCGACTTCTGAAGAAGTATGAATGGCGTCTTTGGTTGGACGGGGGTTTCCATTTGTCGCCGAGGATTAAAGGAATGAAATTAAGGAGGTACCTGGCTCGATTCCGGGCGCAGGCTTCGAGATGGCGGTGGAAGGCTTGGCCAAGGCAGATATGGCCGAGCGATAAAGGCCCGGAGTTTCATGATACTCCTGGGGTTATCCTAACTAAGCTGAATCCTGGAAAATTTAGCCCTGATAACCCCAGGGTTTTCAGCTATGCGGAGCTCTACATCGCCACCAAGGGTTTCTGCAAGGATGAGCTGCTCGGAAGCGGGGGTTTCGGTCGGGTTTACAAGGCGGTTTTGCCCAGCGATGGCTCTATTGTGGCCGTGAAATGTCTTTCCGAGAACGGCGAGCGCAGCAGCCTGGAGAAGACCTTTGAGGCCGAGCTCGCGGCCGTTGGGCAGCTGCGGCACAAGAATCTGGTGTCGCTCAAGGGCTGGTGCTTTGAAGAACAAGAACTTCTTTTGGTCTATGATTACATGCCTAATTCCAGCCTCGACAAGATTTTATTCGTCCGAAATGGCCCGGTTCTTGAATGGCGGAGGCGTTACAAGATCGTTGCGGGGCTCGCCGCGGCGTTATTTTATTTGCATGAGCAGCTGGAAACGCAGATCATTCACAGAGATGTGAAGGCCAGCAATGTGATGCTCGACTCGGGATTTAACGCCCGTCTTGGCGACTTCGGCCTCGCGCGCTGGCTTGAGCATGCCGTCGATCAGGGTTTCCAATTCCATGGAGACGCGCCGGGAAATAAAAGATATAATAACAGTTCCAACAGGCATTTCAGGCTGTCGGAAACGAGCCGAATTGGTGGCACGATCGGGTATGTTTCGCCGGAGAGTTTGCAGAAGCGGAGCAAACCAACGGCAAAATCAGATGTCTTCAGCTTCGGGATCGTGGCACTCGAGGTGGCCTCCGGTCGCCGGGCTATAGATTTAACTTTTCCGGATGAGCAGATCGTGCTGGTGGACTGGATCCGGGTTCTTTACGAGGAAAATAGACTTCTTGAAGCCGGCGACGGCAGGTTACCGGACGGTTATGGCCTTGAAGAAATGAGGCGGTTGCTGCAAATCGGACTTCTTTGCTCCTTAAACGATCCTTCGGCCCGGCCAACGACGAAGTGGATAATCCAGGCATTGGACGGAGACGTAGACGTTCCAGCGTTGCCGTCCTTCAAGGCTCTGCCATACTATGCATCGTTGTCTTCGGAGAGCTCCGAAAGCCTCAGCACCACCACGCAGAGCAATAAAGAAAAGCTATGGTCTGGCTCCTGCAAAGTCCACAGTCCGACCTCAAACAACGATAGCGCTACCTCAATTCGCTCCACGCCAACGGACTACGCTCAGCTTGTAGACGCACCGCGGGAGTTCACGCTACGGGAAATAATCGCTGCAACGGAGAGCTTCGGCGAGGGCAACATGGTTGCCGAGATGGACTTCGGCACGGCCTACCGTGGCGTGCTGCGGGATTCGAACGTGCGAATCTTAGTTAAACGCCTGGGGATGAAAACCTGCCCGGCGCTTCGTGCCCGTTTCGCGCACGAGCTCTCGAACCTCGGGCGCCTGCGCCACCGGAACCTGGTACAGCTCCGGGGCTGGTGCACCGAGAAGGGCGAA

Fln Alignment:

sp_v1.1_unigene22537___PRVFSYAELYIATKGFCKDELLGSGGFGRVYKAVLPSDGSIVAVKCLSENGERSSLEKTFEAELAAVGQLRHKNLVSLKGWCFEEQELLLVYDYMPNSSLDKILFVRNGPVLEWRRRYKIVAGLAAALFYLHEQLETQIIHRDVKASNVMLDSGFNARLGDFGLARWLEHAVDQGFQFHGDAPGNKRYNNSSNRHFRLSETSRIGGTIGYVSPESLQKRSKPTAKSDVFSFGIVALEVASGRRAIDLTFPDEQIVLVDWIRVLYEENRLLEAGDGRL--PDGYGLEEMRRLLQIGLLCSLNDPSARPTTKWIIQALDGDVDVP
A9NVC0_______________PHRFTYKELSIATSRFRDENVLGYGGFGMVYKGVLPSSGQEVAVKCITT--EFTEGMKGFVAEISSMGRLRHRNLVQLRGWCRRHTQLFIVYDYMPNGSLDKLIFGNPTTVLPWHRRYAILKGVAAGLLYLHEQWEKRVVHRDIKSSNVLLDSELNGRLGDFGLARLYDHAEN-------------------------PETTHVVGTLGYIAPELIQ-TGKATPSSDVFSFGVLLLEVACGRNPVDSLEDSERMILAEWAWELYTEGRLLEASDPKLAGKGGYDVGEMEKVLKLGLLCSHPEPESRLGMRHVCQILDGEAPIP

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
229	77		22		0.999999
230	22	77			0.999999
243		90		10	0.90298
244		10	90		0.90298
246	90			10	0.90298
247	90		10		0.90298
250	90	10			0.90298
254			10	90	0.90298
255	90		10		0.90298
257			90	10	0.90298
259	90			10	0.90298
260	90	10			0.90298
261	10		90		0.90298
263		90		10	0.90298
326		20	80		0.999996
335		20		80	0.999996
1377		20	80		0.995493
1380	75			25	0.996473
1381	75		25		0.996473
1382	75		25		0.996473
1386		75		25	0.996473
1387	75	25			0.996473
1390			75	25	0.996473
1391		25	75		0.996473
1392	25	75			0.996473
1597		60		40	1.0
1627			80	20	0.995493
1669	50		50		1.0
1747		80		20	0.995493
1762			60	40	1.0
1810	25			75	0.996473
1880			66	33	0.997452
1881		66	33		0.997452
1883		66	33		0.997452
1884		66		33	0.997452
1891		33	66		0.997452
1892	33		66		0.997452
1895			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain