SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22525

Length: 2316 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22525
CGTCGTGACCTTGGCTGTCACTCAACGCCGGTGGGAAAGCGAGAATTGGGGTTGGGCCGCTGCCTTCCATTCAACTTCAACGTCTGTGGTTGGCTGTCACTTTGGTCAAATGACGGTGGGTTGGCTGTATGCCTATTTAGCTGAGAAAGAAAAACGAAACACAGCAGAGCTCATCAATAGCTGGCCAGGGAAACTGGGAATTTAGAAATTTTTTGAATGTCCAATTCAGTCGCCGAGGATCTCAAGAGTCAGGACAGAAGATCGGATAGATTGCTAAACTGCAAGTTCGGAGTTCTGAAAATTTGAACTACCCAGTTGATTATCTGAGGTTCTGAATACACCCAACTGAATTCGAGGCAAATAAACTATAGCTCACAAGTGCTTCCGAGAGTAGAAGAGAAATGGCTTCGTCAGGTTTGTCCAGAATAGGGTTGGCTGGCCTGGCTGTGATGGGCCAGAATCTTGCTCTCAATATTGCAGAGAAAGGCTTCCCCATCTCGGTCTACAACAGGAGCAGTGAAAAAGTGGATGAGACTGTTGAGAGAGCCAAGGTTGAAGGTAATCTGCCCGTGAAGGGCTTCCATGACCCAAAGGATTTTGTGAATTCAATCCAAAAAGCCCAGAGTTATAATCCTGCTCGTCAAAGCAGGACTCCCAGTGGACAAAACAATAGAAACCCTATCCGCCCACATGGAGGAAGGGGACTGCATTGTGGATGGTGGGAATGAATGGTATGAAAACACAGAGAGGAGACAGGAGGCTGCCAAGCAGAAAGGGCTGCTGTATTTGGGGATGGGAGTCTCTGGCGGTGAGGAAGGAGCCAGGCATGGCCCCTCTCTGATGCCCGGAGGGTCATTTGAAGCCTACAAGTACATCGAGGACATATTGCTAAAGGTGGCTGCACAGGTTGACAGTGGACCATGTGTGACTTACATTGGTAAAGGCGGAGCAGGCAATTTTGTCAAGATGGTGCATAATGGCATTGAGTATGGAGACATGCAGCTCATTGCAGAGGCTTATGATGTTCTAAAGTCTGTCGGTAAGCTCACTAACGAAGAACTGCACCAGGCTTTTGATACTTGGAATAAGGGGGAATTGTGTAGTTTTTTGATAGAAATCACTGCGGATATCTTTGGGATCAAGGATGATAAGGGGGATGGGTATCTTGTGGATAAAGTTCTCGATAAAACTGGCATGAAGGGCACTGGTAAGTGGACTGTGCAACAAGCTGCAGATCTGTCTGTTGCAGCCCCTACCATTGCTTCTTCTTTGGATTCTAGGTTTCTTAGTGGATTGAAGGAGGAGAGGGTGGAGGCCTCCAAGGTGTTCAAGAATGTAGATGTGGGTACTGTGCCAGATTTGGATAAGACCAAGCTTATTGATGATGTGAGGCGGGCTCTGTATGCATCTAAGATATGTAGTTATGCCCAAGGAATGAATCTGATCCGTGCGAAGAGCATAGAGAAGGGATGGGATTTGAAACTGGGAGAGCTCGCCCGGATCTGGAAGGGTGGTTGCATCATTCGTGCGATTTTCCTCGATCGGATCAAGAAGGCCTATGACAGGAATCCAGATCTGTTTAGTCTGTTGGTTGATCCTGAATTTGCAAAGGAAATGATTGAGAGACAGTCAGCGTGGCGGCGAGTTGTGACTCTTGCGATCAACGCTGGTGTCAGCGTTCCAGGTATGTCTGCAAGTTTGGCGTACTTTGATTCCTATAGAAGGGAGAGTTTGCCTGCAAACCTGGTTCAGGCACAGCGAGATTATTTCGGTGCTCACACCTATGAGAGGATTGATATGCCTGGTTTCTTCCACACTGAGTGGTTCAAGATTGCAAAACAATCAAAGATTTGAAATTTTTTAGATTGTCGAACCCCAGAGAGAATAAGCCCATCCATGCTTTAGGTTTAAGTGTTAAATTGCATAGTGAATTCTGTTGGCAATTCGTAGTTTCTTAAGAAAGTTTTCCCTATCAATTGCTTATGTGTTTTCTGTACTTTTTCAAATTCAAAGAAACAAAGAACGTATCGAGGTTTTTGAATAAATCCTTGCTTGAATTTCAGAGCAGAAAGCTACTAATCTGGTGTGTTTTACTGGATTAAGAGATCAAATTTTAGCTATCTTATTTTAAAAATGAATACAGAGGCAGGCTGCTTATGTTCAAATTCGCTATTTTGCTGACCAGAATATAATCGTTTATGTGGTTAGACAAAAGGTTGTGGATCTAAGGTCTTTGTGAAGGTTTTCAAGAACATTTTCTTGGATGTATGGAAATTTTCTGCATTAAATGTATATACTGTGGTGTGTGGGATAGGC

Ace file of the UniGene sp_v1.1_unigene22525

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Spinacia oleracea RepID=Q94KU1_SPIOL	-	-	81%
FL-Next	sp=6-phosphogluconate dehydrogenase, decarboxylating; Pinus pinaster (Maritime pine).	-	-	100%
Blast2go	6-phosphogluconate dehydrogenase	-	-	95%

Source	InterPros	Term	Type	Identity
Blast2go	6-phosphogluconate dehydrogenase, decarboxylating	IPR006113	-	95%
Blast2go	6-phosphogluconate dehydrogenase, C-terminal	IPR006114	-	95%
Blast2go	6-phosphogluconate dehydrogenase, NADP-binding	IPR006115	-	95%
Blast2go	6-phosphogluconate dehydrogenase, C-terminal-like	IPR008927	-	95%
Blast2go	Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension	IPR012284	-	95%
Blast2go	Dehydrogenase, multihelical	IPR013328	-	95%
Blast2go	NAD(P)-binding domain	IPR016040	-	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: E3V289

Fln msg: Overlapping hits, possible frame ERROR between 617 and 613,

Fln protein: MASSGLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRSSEKVDETVERAKVEGNLPVKGFHDPKDFVNSIxxxPRVIILLVKAGLPVDKTIETLSAHMEEGDCIVDGGNEWYENTERRQEAAKQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVDSGPCVTYIGKGGAGNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLTNEELHQAFDTWNKGELCSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDSRFLSGLKEERVEASKVFKNVDVGTVPDLDKTKLIDDVRRALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPDLFSLLVDPEFAKEMIERQSAWRRVVTLAINAGVSVPGMSASLAYFDSYRRESLPANLVQAQRDYFGAHTYERIDMPGFFHTEWFKIAKQSKI*

Protein Length: 486

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACGCCGGTGGGAAAGCGAGAATTGGGGTTGGGCCGCTGCCTTCCATTCAACTTCAACGTCTGTGGTTGGCTGTCACTTTGGTCAAATGACGGTGGGTTGGCTGTATGCCTATTTAGCTGAGAAAGAAAAACGAAACACAGCAGAGCTCATCAATAGCTGGCCAGGGAAACTGGGAATTTAGAAATTTTTTGAATGTCCAATTCAGTCGCCGAGGATCTCAAGAGTCAGGACAGAAGATCGGATAGATTGCTAAACTGCAAGTTCGGAGTTCTGAAAATTTGAACTACCCAGTTGATTATCTGAGGTTCTGAATACACCCAACTGAATTCGAGGCAAATAAACTATAGCTCACAAGTGCTTCCGAGAGTAGAAGAGAA_-_ATGGCTTCGTCAGGTTTGTCCAGAATAGGGTTGGCTGGCCTGGCTGTGATGGGCCAGAATCTTGCTCTCAATATTGCAGAGAAAGGCTTCCCCATCTCGGTCTACAACAGGAGCAGTGAAAAAGTGGATGAGACTGTTGAGAGAGCCAAGGTTGAAGGTAATCTGCCCGTGAAGGGCTTCCATGACCCAAAGGATTTTGTGAATTCAATCxxxxxxxxxCCCAGAGTTATAATCCTGCTCGTCAAAGCAGGACTCCCAGTGGACAAAACAATAGAAACCCTATCCGCCCACATGGAGGAAGGGGACTGCATTGTGGATGGTGGGAATGAATGGTATGAAAACACAGAGAGGAGACAGGAGGCTGCCAAGCAGAAAGGGCTGCTGTATTTGGGGATGGGAGTCTCTGGCGGTGAGGAAGGAGCCAGGCATGGCCCCTCTCTGATGCCCGGAGGGTCATTTGAAGCCTACAAGTACATCGAGGACATATTGCTAAAGGTGGCTGCACAGGTTGACAGTGGACCATGTGTGACTTACATTGGTAAAGGCGGAGCAGGCAATTTTGTCAAGATGGTGCATAATGGCATTGAGTATGGAGACATGCAGCTCATTGCAGAGGCTTATGATGTTCTAAAGTCTGTCGGTAAGCTCACTAACGAAGAACTGCACCAGGCTTTTGATACTTGGAATAAGGGGGAATTGTGTAGTTTTTTGATAGAAATCACTGCGGATATCTTTGGGATCAAGGATGATAAGGGGGATGGGTATCTTGTGGATAAAGTTCTCGATAAAACTGGCATGAAGGGCACTGGTAAGTGGACTGTGCAACAAGCTGCAGATCTGTCTGTTGCAGCCCCTACCATTGCTTCTTCTTTGGATTCTAGGTTTCTTAGTGGATTGAAGGAGGAGAGGGTGGAGGCCTCCAAGGTGTTCAAGAATGTAGATGTGGGTACTGTGCCAGATTTGGATAAGACCAAGCTTATTGATGATGTGAGGCGGGCTCTGTATGCATCTAAGATATGTAGTTATGCCCAAGGAATGAATCTGATCCGTGCGAAGAGCATAGAGAAGGGATGGGATTTGAAACTGGGAGAGCTCGCCCGGATCTGGAAGGGTGGTTGCATCATTCGTGCGATTTTCCTCGATCGGATCAAGAAGGCCTATGACAGGAATCCAGATCTGTTTAGTCTGTTGGTTGATCCTGAATTTGCAAAGGAAATGATTGAGAGACAGTCAGCGTGGCGGCGAGTTGTGACTCTTGCGATCAACGCTGGTGTCAGCGTTCCAGGTATGTCTGCAAGTTTGGCGTACTTTGATTCCTATAGAAGGGAGAGTTTGCCTGCAAACCTGGTTCAGGCACAGCGAGATTATTTCGGTGCTCACACCTATGAGAGGATTGATATGCCTGGTTTCTTCCACACTGAGTGGTTCAAGATTGCAAAACAATCAAAGATTTGA___AATTTTTTAGATTGTCGAACCCCAGAGAGAATAAGCCCATCCATGCTTTAGGTTTAAGTGTTAAATTGCATAGTGAATTCTGTTGGCAATTCGTAGTTTCTTAAGAAAGTTTTCCCTATCAATTGCTTATGTGTTTTCTGTACTTTTTCAAATTCAAAGAAACAAAGAACGTATCGAGGTTTTTGAATAAATCCTTGCTTGAATTTCAGAGCAGAAAGCTACTAATCTGGTGTGTTTTACTGGATTAAGAGATCAAATTTTAGCTATCTTATTTTAAAAATGAATACAGAGGCAGGCTGCTTATGTTCAAATTCGCTATTTTGCTGACCAGAATATAATCGTTTATGTGGTTAGACAAAAGGTTGTGGATCTAAGGTCTTTGTGAAGGTTTTCAAGAACATTTTCTTGGATGTATGGAAATTTTCTGCATTAAATGTATATACTGTGGTGTGTGGGATAGGC

Fln Alignment:

sp_v1.1_unigene22525___GLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRSSEKVDETVERAKVEGNLPVKGFHDPKDFVNSIxxPRVIILLVKAGLPVDKTIETLSAHMEEGDCIVDGGNEWYENTERRQEAAKQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVDSGPCVTYIGKGGAGNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLTNEELHQAFDTWNKGELCSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDSRFLSGLKEERVEASKVFKNVDVGTVPDLDKTKLIDDVRRALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPDLFSLLVDPEFAKEMIERQSAWRRVVTLAINAGVSVPGMSASLAYFDSYRRESLPANLVQAQRDYFGAHTYERIDMPGFFHTEWFKIAKQSKI
E3V289_______________GLSRIGLAGLAVMGQNLALNIAEKGFPISVYNRSSEKVDETVERAKVEGNLPVKGFHDPKDFVNSIxxPRVIILLVKAGLPVDKTIETLSAHMEEGDCIVDGGNEWYENTERRQEAAKQKGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVDSGPCVTYIGKGGAGNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLTNEELHQAFDTWNKGKLCSFLIEITADIFGIKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDSRFLSGLKEERVEASKVFKNVDVGTVPDLDKTKLIDDVRRALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARIWKGGCIIRAIFLDRIKKAYDRNPDLFSLLVDPEFAKEMIERQSAWRRVVTLAINAGVSVPGMSASLAYFDSYRRESLPANLVQAQRDYFGAHTYERIDMPGFFHTEWFKIAKQSKI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
576	83			16	0.994512
616	40		60		1.0
1071		88		11	0.923564
1072		11		88	0.923564
1100		12		87	0.992554
1714			6	93	0.999364
2066	6		93		0.999453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain