SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22516

Length: 1626 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22516

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lhcb5 protein n=6 Tax=Pinaceae RepID=Q41040_PINSY	-	-	80%
FL-Next	tr=Lhcb5 protein; Pinus sylvestris (Scots pine).	-	-	98%
Blast2go	chlorophyll a b-binding	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	response to blue light	GO:0009637	Biological Process	94%
Blast2go	nonphotochemical quenching	GO:0010196	Biological Process	94%
Blast2go	response to far red light	GO:0010218	Biological Process	94%
Blast2go	response to red light	GO:0010114	Biological Process	94%
Blast2go	photosynthesis	GO:0015979	Biological Process	94%
Blast2go	chloroplast stromal thylakoid	GO:0009533	Cellular Component	94%
Blast2go	plastoglobule	GO:0010287	Cellular Component	94%
Blast2go	PSII associated light-harvesting complex II	GO:0009517	Cellular Component	94%
Blast2go	photosystem II antenna complex	GO:0009783	Cellular Component	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q41040

Fln msg:

Fln protein: MASMAALGSTAALGRADQILWNPLNLNKLAASTAASRSSTRPTSPSLQVVSLFGFKKKAAPPPPPPKSKAKAAAAPATEELAKWYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLSRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVVLVGGAEYYRATNGLDFDDKLHPGGPFDPLGLAKDPDQFAILKVKEIKNGRLAMFSMLGFFLQAYVTGEGPVENLAAHLSDPFGNNILTVLGGSLERAPTL*

Protein Length: 304

Fln nts: TATCAACGCAGAGTAAGCAGTGGGTATCAACGCAGAGTAAGCAGTGGGTATCAACGCAGAGTAAGCAGTGGGTATCAACGCAGAGTAAGCAGTGGGTATCAACGCAGAGTAAGCAGTGGGTATCGAACGCAGAGTAAGCAGTGGTATCGAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATACAAACGCAGAGTAAGCAGTGGTATCTCTCCCTCTTCATGAGCGTGGAAGTATTTGGCGAGAGGCCGGCTCAGTTGGGATTGCATTGAATTTTGGAAAGAATTGGAGCAGCGCG_-_ATGGCTTCCATGGCTGCACTGGGTTCCACTGCAGCTCTAGGAAGAGCAGATCAAATACTTTGGAATCCATTGAATCTGAACAAGCTTGCAGCATCAACCGCTGCATCCAGATCATCCACAAGGCCAACTTCTCCTTCCCTGCAGGTTGTTTCTCTCTTTGGCTTTAAAAAGAAAGCAGCACCCCCGCCTCCTCCTCCCAAATCCAAAGCCAAGGCAGCAGCTGCCCCTGCAACCGAAGAGCTTGCAAAGTGGTATGGTCCAGACAGGAGGATCTTTCTCCCAGAAGGTCTACTTGACAGGGATGACATACCTGAGTACCTCAATGGTGAGGTCCCTGGAGATTATGGATATGATCCGTTTGGACTTAGTAGGAAACCAGAAAACTTTGACAAGTACCAAGCATATGAACTCATTCATGCAAGATGGGCAATGCTGGGAGCTGCAGGGTTCATTATCCCAGAGGCCTTTAACAAATTCGGTGCCTACTGCGGTCCTGAAGCTGTTTGGTTTAAGACGGGTGCTCTTCTTCTTGATGGAGGTACGCTATCTTACTTCGGTGCCAGCATTCCCATCAATTTGATTGCTGCTGTCGTTGCAGAGGTGGTCCTTGTTGGTGGCGCTGAATACTACAGGGCAACAAATGGGCTGGACTTTGACGACAAGCTTCACCCGGGAGGACCATTTGATCCATTGGGATTGGCGAAGGACCCAGACCAGTTCGCCATTCTTAAGGTGAAGGAGATTAAAAATGGAAGGTTGGCCATGTTCTCAATGCTCGGCTTCTTCCTTCAAGCTTATGTTACTGGTGAGGGTCCTGTGGAGAATCTGGCTGCCCATTTGAGTGATCCTTTTGGAAACAACATTCTAACCGTCCTCGGAGGTTCCCTTGAGCGGGCACCTACATTGTAG___AATATGAATCTCCATCAGCTTTTCCTCCTTTTAATTTGCTTTGCATTTGGCACTCCTTTTATGTCACTTCTCTCACATGAATTCGGTTTGAGTTCACACAGTTAGAGTTCGATCAAACACTGAAGCTCTCTGTAACTCTCCTTCTTCACACTATCAAGTACCTTGAGAATTTAAGTGGACTTCAATTCTACACTATGTTTATACCCGGTGTGTTCTGAGTTGTATATTTTTAAGTGGAATTCAACTCTACAGTATGTCTGTATCCGGTGTGTTCTTGAGTATTTATTTTATTTGGTACGGTGGGCATGTTGCACTTTGGGTGCTTAATAAATGAAAAATCAATGAATCAATCATTGATTTATG

Fln Alignment:

sp_v1.1_unigene22516___RADQILWNPLNLNKLXXXXXXXXXXXXXXXXXLQVVSLFGFXXXXXXXXXXXXXXXXXXXXXXTEELAKWYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLSRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIXXXXXXXXXXXXXXYYRATNGLDFDDKLHPGGPFDPLGLAKDPDQFAILKVKEIKNGRLAMFSMLGFFLQAYVTGEGPVENLAAHLSDPFGNNILTVLGGSLERAPTL
Q41040_______________RADQILWNPLNLNKLAASTAASRSSTRPTSPSLQVVSLFGFKKKAAPPPPPPKSKAKAAAAPATEELAKWYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVVLVGGAEYYRATNGLNFDDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFLQAYVTGEGPVENLAAHLSDPFGNNILTVLGGSLERAPTL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
950	16		83		0.994512
952			16	83	0.994512
954		83	16		0.994512
960		16		83	0.994512
966	14			85	0.993533
969			14	85	0.993533
1096	4		95		0.996252
1256		95		4	0.997218
1420	94		5		1.0
1454	3			96	0.982166
1456	1	8		89	1.0
1468	90		6	3	0.996531
1528			14	85	0.993533
1546	16		83		0.994512

SSRs (tot: 2)

Start position	End position	Sequence	Length
1	124	TATCAACGCAGAGTAAGCAGTGGG TATCAACGCAGAGTAAGCAGTGGG TATCAACGCAGAGTAAGCAGTGGG TATCAACGCAGAGTAAGCAGTGGG TATCAACGCAGAGTAAGCAGTGGG TATC	124
150	240	AACGCAGAGTAAGCAGTGGTATC AACGCAGAGTAAGCAGTGGTATC AACGCAGAGTAAGCAGTGGTATC AACGCAGAGTAAGCAGTGGTAT	91

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain