SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22512

Length: 2396 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22512
CGTCGTGACCTTGGCTGTCACTCAAATGGCAGTAGTATATTTAACGTGGTGCCGTTGGTTGTCACTCTAGCGCCGGGTTTTTTCACATTCTATTTTGGTTGGCTGTGGCGGAGCAGTGCTCAATACCCGGTTACAGAGAAATCCCTGTTCACACGAAGCGAAGTTTTTCCTTCATTCTCTACCAACAGTTGGACTCCATTATCAGCTTCCTCCGTATCTTCGCAGCAGCGAAGGATTTCGGAGGCAAAATTGTTTATCAGGAGGAAGCGAAATCGTTTTATCTTCTACGAAAAGGTTAGGCGGTGGTTGGCGTCTTGAACTGGTAATTGTGGAAGGTTTTTTGGTACTCTGTTGCCGAGAAGTTTAGATCATGGCTCCTAGACCATTGGATTATGAGTGTATTAATGAGAATGTGAAGAAGGTCGCTTATGCAGTCAGAGGGGAGCTCTATCTGCGTGCCTCGGAGCTTCAGAAGGAAGGAAAAAAGATTATTTTTACAAATGTTGGTAACCCACAAGCTTTGGGTCAAAGGCCTTTGACATTCCCACGTCAGGTTATGGCATTGTGTCAAGCACCGATGCTAATGGAGGATCCTAACGTGAACATTCTGTTCCCAGCTGATGTAATAGCAAAAGCAAAGCATTATCTTGCAATGACAACAGGTGGTCTTGGTGCCTACAGTGATTCACGGGGTCTTCCAGGTATCCGAAAGGAAGTGGCTGAATTTATTGAAAGGCGTGATGGGTATCCTAGTGATCCAGATCTTATTTTCCTCACAGATGGTGCTAGCAAAGGAGTCATGCAGATTCTTAACACTATTATTCGTGATGAAAAAGATGGGATTTTAGTTCCAGTTCCACAGTATCCACTTTACTCTGCAGCTATCTCCCTATTTGGCGGCACTCTTGCACCATACTACCTGGAAGAGAGCGCAAATTGGGGTCTGGATATTGGGGAATTAAGAAAATCGGTTTTGGAAGCCCGTTATAAAGGAATAACTGTTCGAGCCATGGTGATTATAAATCCAGGAAATCCAACTGGTCAGTGTCTAAGCAGAGATAATATTAAGGAACTAATTGAATTTTGCTATGTTGAGAATCTGGTATTGTTAGCAGACGAGGTTTATCAACAAAATATTTATCAGGATGAGCGCCCCTTTGTAAGCGCAAAGAAGGTTTTGATGGACATGGGCTTACCTTTCAGCAAAGAACTCCAACTTGTGTCATATCATACTGTATCGAAAGGATACTGGGGTGAGTGTGGGCAGCGTGGAGGATATTTTGAAATGACAAACATTCCTCCTAAGACAGTTGATGAGATATATAAAGTGGCATCAATATCTCTAAGTCCTAATGTGCCCGGTCAAGTATTTCTAGGATTGATGGTTAATCCACCAAAACCGGCTGATATATCCTATCAGATGTTTGTCACAGAAAGCAAGGAAATACTCGAGTCACTGAGGAGAAGAGCTCACTTGATGACTGATGGATTTAATAGTTGCCGGAATGTAGTCTGCAATTTCACTGAAGGGGCTATGTACTCATTCCCACAAATAAAGTTACCACCCAAAGCTATAGCTGCTGCCAAAGAGGCTGGAAAGGCTCCAGATGTATTTTATTGTCTCAAGTTGCTAGAGGCAACAGGAATATCCACTGTCCCTGGTTCAGGATTCGGTCAAAAAGAAGGGGTTTTCCACTTGAGAACAACAATTTTACCTCCTGAAGAAGAGATGCCTGAGATAATGAAAAGTTTTAAGATTTTCAATGATGACTTCATGGCAGCATATGAAGGCTATAGTTGGTCAAGACTGTAAAGACAACTTTCTGGGCATTCAAACTTTCATGGAGAACACAATGCTTTATCTGCTATCTTCATATTATAATGTGGTATATTTTCAAAGTAGGCCTGCCTGGCATTATTAAAGGAAGAGACTTTGTTGTCTGTTGTGTAATTATTTGAATGGGACTATTGCCTACTCAAATTTGTTTGGTTTGGTTCAGGACTCTGGCTAACCAAACCGAATTTGCATATAAACGCTGTGTGAAATATGTTTCATATTTTCATTCAAGCCACTTTTACAGACACTGTAATCATAAAAATCACAAATGTCTGCGGTGCTGTATAGTCTGACCCAAATCTCCTACTGTTAATCAACGGTTGCATAACAAAGTAACATTGAACAAACCCCTTGCATCTATCTCGGAATTTTGAATAAATAAGCCATGTGAAAGATGGGCCACCTTCTAAATGCATCTTTTGATGTTGATCTAGGTGGTCTGCTGGATAAAGACATCGACAACCATTTGATAACAGAAAAACATGAATACGTTGAAGATCTTTATAGGGCATATTAGTTGAAATTTGTAAACTGAGTTCTACGATTATTCATGGTTCAC

Ace file of the UniGene sp_v1.1_unigene22512

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alanine transaminase (EC:2.6.1.2); K00814 alanine transaminase [EC:2.6.1.2]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	alanine aminotransferase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alanine--glyoxylate transaminase.	EC:2.6.1.44	-	0.0	90%

Source	KEGGs	Term	Type	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250		90%
Blast2go	Glycine, serine and threonine metabolism	00260		90%
Blast2go	Metabolic pathways	01100		90%
Blast2go	Alanine transaminase.	EC:2.6.1.2	-	90%

Source	KEGGs	Term	Type	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250		90%
Blast2go	Carbon fixation in photosynthetic organisms	00710		90%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		90%
Blast2go	Metabolic pathways	01100		90%
Blast2go	Glutathione gamma-glutamylcysteinyltransferase.	EC:2.3.2.15	-	90%
Blast2go	Glycine transaminase.	EC:2.6.1.4	-	90%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycine, serine and threonine metabolism	00260		0.0	90%
Blast2go	Metabolic pathways	01100		0.0	90%

Source	ECs	Term	Type	e value	Identity
AutoFact	Alanine transaminase.	EC:2.6.1.2	-	0.0	79%

Source	KEGGs	Term	Identity
AutoFact	Alanine, aspartate and glutamate metabolism	00250	79%
AutoFact	Carbon fixation in photosynthetic organisms	00710	79%
AutoFact	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	79%
AutoFact	Metabolic pathways	01100	79%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	90%
Blast2go	glutathione catabolic process	GO:0006751	Biological Process	90%
Blast2go	photorespiration	GO:0009853	Biological Process	90%
Blast2go	alanine-glyoxylate transaminase activity	GO:0008453	Molecular Function	90%
Blast2go	L-alanine:2-oxoglutarate aminotransferase activity	GO:0004021	Molecular Function	90%
Blast2go	glutathione gamma-glutamylcysteinyltransferase activity	GO:0016756	Molecular Function	90%
Blast2go	glycine:2-oxoglutarate aminotransferase activity	GO:0047958	Molecular Function	90%
Blast2go	peroxisome	GO:0005777	Cellular Component	90%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	90%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	90%
Blast2go	vacuole	GO:0005773	Cellular Component	90%
Blast2go	membrane	GO:0016020	Cellular Component	90%
Blast2go	apoplast	GO:0048046	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	90%
Blast2go	Aminotransferase, class I/classII	IPR004839	-	90%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	90%
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	90%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXT3

Fln msg:

Fln protein: MAPRPLDYECINENVKKVAYAVRGELYLRASELQKEGKKIIFTNVGNPQALGQRPLTFPRQVMALCQAPMLMEDPNVNILFPADVIAKAKHYLAMTTGGLGAYSDSRGLPGIRKEVAEFIERRDGYPSDPDLIFLTDGASKGVMQILNTIIRDEKDGILVPVPQYPLYSAAISLFGGTLAPYYLEESANWGLDIGELRKSVLEARYKGITVRAMVIINPGNPTGQCLSRDNIKELIEFCYVENLVLLADEVYQQNIYQDERPFVSAKKVLMDMGLPFSKELQLVSYHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKVASISLSPNVPGQVFLGLMVNPPKPADISYQMFVTESKEILESLRRRAHLMTDGFNSCRNVVCNFTEGAMYSFPQIKLPPKAIAAAKEAGKAPDVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPPEEEMPEIMKSFKIFNDDFMAAYEGYSWSRL*

Protein Length: 482

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGGCAGTAGTATATTTAACGTGGTGCCGTTGGTTGTCACTCTAGCGCCGGGTTTTTTCACATTCTATTTTGGTTGGCTGTGGCGGAGCAGTGCTCAATACCCGGTTACAGAGAAATCCCTGTTCACACGAAGCGAAGTTTTTCCTTCATTCTCTACCAACAGTTGGACTCCATTATCAGCTTCCTCCGTATCTTCGCAGCAGCGAAGGATTTCGGAGGCAAAATTGTTTATCAGGAGGAAGCGAAATCGTTTTATCTTCTACGAAAAGGTTAGGCGGTGGTTGGCGTCTTGAACTGGTAATTGTGGAAGGTTTTTTGGTACTCTGTTGCCGAGAAGTTTAGATC_-_ATGGCTCCTAGACCATTGGATTATGAGTGTATTAATGAGAATGTGAAGAAGGTCGCTTATGCAGTCAGAGGGGAGCTCTATCTGCGTGCCTCGGAGCTTCAGAAGGAAGGAAAAAAGATTATTTTTACAAATGTTGGTAACCCACAAGCTTTGGGTCAAAGGCCTTTGACATTCCCACGTCAGGTTATGGCATTGTGTCAAGCACCGATGCTAATGGAGGATCCTAACGTGAACATTCTGTTCCCAGCTGATGTAATAGCAAAAGCAAAGCATTATCTTGCAATGACAACAGGTGGTCTTGGTGCCTACAGTGATTCACGGGGTCTTCCAGGTATCCGAAAGGAAGTGGCTGAATTTATTGAAAGGCGTGATGGGTATCCTAGTGATCCAGATCTTATTTTCCTCACAGATGGTGCTAGCAAAGGAGTCATGCAGATTCTTAACACTATTATTCGTGATGAAAAAGATGGGATTTTAGTTCCAGTTCCACAGTATCCACTTTACTCTGCAGCTATCTCCCTATTTGGCGGCACTCTTGCACCATACTACCTGGAAGAGAGCGCAAATTGGGGTCTGGATATTGGGGAATTAAGAAAATCGGTTTTGGAAGCCCGTTATAAAGGAATAACTGTTCGAGCCATGGTGATTATAAATCCAGGAAATCCAACTGGTCAGTGTCTAAGCAGAGATAATATTAAGGAACTAATTGAATTTTGCTATGTTGAGAATCTGGTATTGTTAGCAGACGAGGTTTATCAACAAAATATTTATCAGGATGAGCGCCCCTTTGTAAGCGCAAAGAAGGTTTTGATGGACATGGGCTTACCTTTCAGCAAAGAACTCCAACTTGTGTCATATCATACTGTATCGAAAGGATACTGGGGTGAGTGTGGGCAGCGTGGAGGATATTTTGAAATGACAAACATTCCTCCTAAGACAGTTGATGAGATATATAAAGTGGCATCAATATCTCTAAGTCCTAATGTGCCCGGTCAAGTATTTCTAGGATTGATGGTTAATCCACCAAAACCGGCTGATATATCCTATCAGATGTTTGTCACAGAAAGCAAGGAAATACTCGAGTCACTGAGGAGAAGAGCTCACTTGATGACTGATGGATTTAATAGTTGCCGGAATGTAGTCTGCAATTTCACTGAAGGGGCTATGTACTCATTCCCACAAATAAAGTTACCACCCAAAGCTATAGCTGCTGCCAAAGAGGCTGGAAAGGCTCCAGATGTATTTTATTGTCTCAAGTTGCTAGAGGCAACAGGAATATCCACTGTCCCTGGTTCAGGATTCGGTCAAAAAGAAGGGGTTTTCCACTTGAGAACAACAATTTTACCTCCTGAAGAAGAGATGCCTGAGATAATGAAAAGTTTTAAGATTTTCAATGATGACTTCATGGCAGCATATGAAGGCTATAGTTGGTCAAGACTGTAA___AGACAACTTTCTGGGCATTCAAACTTTCATGGAGAACACAATGCTTTATCTGCTATCTTCATATTATAATGTGGTATATTTTCAAAGTAGGCCTGCCTGGCATTATTAAAGGAAGAGACTTTGTTGTCTGTTGTGTAATTATTTGAATGGGACTATTGCCTACTCAAATTTGTTTGGTTTGGTTCAGGACTCTGGCTAACCAAACCGAATTTGCATATAAACGCTGTGTGAAATATGTTTCATATTTTCATTCAAGCCACTTTTACAGACACTGTAATCATAAAAATCACAAATGTCTGCGGTGCTGTATAGTCTGACCCAAATCTCCTACTGTTAATCAACGGTTGCATAACAAAGTAACATTGAACAAACCCCTTGCATCTATCTCGGAATTTTGAATAAATAAGCCATGTGAAAGATGGGCCACCTTCTAAATGCATCTTTTGATGTTGATCTAGGTGGTCTGCTGGATAAAGACATCGACAACCATTTGATAACAGAAAAACATGAATACGTTGAAGATCTTTATAGGGCATATTAGTTGAAATTTGTAAACTGAGTTCTACGATTATTCATGGTTCAC

Fln Alignment:

sp_v1.1_unigene22512___MAPRPLDYECINENVKKVAYAVRGELYLRASELQKEGKKIIFTNVGNPQALGQRPLTFPRQVMALCQAPMLMEDPNVNILFPADVIAKAKHYLAMTTGGLGAYSDSRGLPGIRKEVAEFIERRDGYPSDPDLIFLTDGASKGVMQILNTIIRDEKDGILVPVPQYPLYSAAISLFGGTLAPYYLEESANWGLDIGELRKSVLEARYKGITVRAMVIINPGNPTGQCLSRDNIKELIEFCYVENLVLLADEVYQQNIYQDERPFVSAKKVLMDMGLPFSKELQLVSYHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKVASISLSPNVPGQVFLGLMVNPPKPADISYQMFVTESKEILESLRRRAHLMTDGFNSCRNVVCNFTEGAMYSFXXXXXXXXXXXXXXXXXXXXDVFYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILXXXXXXXXIMKSFKIFNDDFMAAYEGYSWSRL
A9NXT3_______________MAPRPLDYECINENVKKVAYAVRGELYLRASELQKEGKKIIFTNVGNPQALGQRPLTFPRQVMALCQAPMLMDDPNVSILFPADVIARAKHYLAMTTGGLGAYSDSRGLPGIRKEVAEFIERRDGYPSDPDLIFLTDGASKGVMQILNTIIRDEKDGILVPVPQYPLYSAAISLFGGTLVPYYLDESANWGLDVGDLRKSVLEARYKGITVRAMVIINPGNPTGQCLSRDNIKELLEFCYAENLVLLADEVYQQNIYQDERPFVSAKKVLMDMGLPFSKELQLVSYHTVSKGYWGECGQRGGYFEMTNIPPKTVDEIYKVASISLSPNVPGQIFLGLMVNPPKPADISYQRFVAESKAILESLRRRAHLMTDGFNNCRNVICNFTEGAMYSFPQIKLPPKAIAAAKEAGKAPDVFYCLKLLEATGMSTVPGSGFGQKEGVFHLRTTILPPEEEMPEIMNVFKIFNDDFMAKYENYSWSRL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
68	33			66	1.0
69	66	33			0.997452
70			66	33	0.997452
474	71		28		1.0
505	14			85	0.993533
1830	28		71		1.0
1866		88		11	0.923564
2079		83		16	0.994512
2115	14		85		0.993533
2118		85	14		0.993533
2179	83		16		0.994512
2185		50		50	1.0
2336		14		85	0.993533
2354	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain