SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22487

Length: 1699 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22487

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carrier protein n=1 Tax=Picea sitchensis RepID=D5ADG8_PICSI	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	ubiquitin-conjugating enzyme e2	-	-	77%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin-conjugating enzyme, E2	IPR000608	-	77%
Blast2go	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	77%
Blast2go	Ubiquitin-conjugating enzyme, active site	IPR023313	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADG8

Fln msg:

Fln protein: MAENENLPPRVIKEIAKELKSLDESPPGGIKVVVNDDNFSTIFADIEGPAGTPYESGVFRMKLVLTPDFPNSPPKGYFVTKIFHPNIANNGEICVNTLKKDWNPTLGLRHVLLVIRCLLVEPFPESALNEQAGKMLMEDYEAYAKHARLYTSIHALKPKLKSKVAISESTALNEGPKNTLVTSPAPLVPCTTNKENNIQDPSINVASTEAIGVGASTVHKKKDLASTKVHVDKKKLDARKKSLKRL*

Protein Length: 248

Fln nts: ATGGGGCCGCTGGGAGCGCCACTGCAGGGGTCCTCTTTTTACGTCATTAAATGAGGGGGCTCCTGAGACGTTGGTTTGATTAATTGCAAATGAATTGTTGTTTGAGGTCCGATTAATCGATGGGCCAGTATTTACAGGTTAATGATGGCGCAGAGGATGGAAGTGTCTTTAATGGATTGAAATGTGCTCTGACGTCCACGGAAGGCGTTAAAAGGTTTCACCCTGTCGAAAGTGCGTTTCTTTTCTGGTGATTTTTCGCAGTCAGCGGAGCATGTGGAAGAGGCAGAAGCAATCATAGCGCAAGCTAAAACGGATCCAACGAATCTTCACTTCTGAATCTTGTTTCGCAGCTCGCGAGGGTTTCAGATATTGCCTTCCGTCCAAAATCAAGTGTGATTGGAAGATCAACCGCTCGAAAGAGATCATGTATGTGAATGCTGAGACAGTTTTGGACAATTTTTGATCATCTTGTCGGTACATACAGCTGAAGACAGAGATAACCTGAAAAGAGATATTTTCTTGTAAAGAAGAACCAAAGGTGTGGACAACCAATTTTAGGGTTTTCAGAAATTTGGACAAGCATTATATGCGCTGTAATAAACTATTTTGCTTCTGATTTC_-_ATGGCTGAAAACGAGAACCTCCCACCCAGGGTGATAAAAGAAATTGCAAAGGAGCTGAAGAGTCTCGATGAATCACCTCCCGGAGGTATAAAAGTGGTGGTGAATGATGACAACTTTTCAACCATATTTGCGGACATTGAAGGACCAGCTGGCACTCCATATGAATCTGGTGTTTTTCGAATGAAACTGGTTCTAACTCCTGATTTTCCCAACTCTCCTCCCAAGGGGTATTTTGTCACAAAAATCTTCCACCCTAATATTGCAAACAATGGAGAGATCTGTGTCAATACTTTGAAGAAGGATTGGAATCCAACCCTTGGATTGCGACATGTTCTTCTTGTCATAAGATGCCTACTTGTAGAACCATTCCCGGAGTCTGCTTTGAATGAACAGGCTGGGAAGATGCTCATGGAAGATTATGAAGCATATGCAAAGCATGCCAGGCTCTATACAAGCATTCACGCTTTGAAGCCCAAATTGAAGAGTAAAGTGGCTATTTCAGAGTCTACTGCTTTAAATGAAGGGCCAAAAAATACCCTTGTGACCTCTCCTGCCCCACTTGTGCCATGCACAACAAATAAGGAGAATAATATTCAAGATCCAAGTATAAACGTCGCTTCAACAGAAGCTATAGGAGTTGGTGCATCAACAGTTCATAAGAAGAAGGATCTGGCTTCTACCAAAGTGCACGTTGATAAGAAAAAGCTCGATGCAAGGAAGAAAAGTCTTAAAAGATTATAG___ACCTTTAGGCCTTTTTATCAGTTATTTGAGTCTTTTAGCTGGTCATGTTACAAAGGTGAGCTAATTTATTCTGTGAAAGTAAAATGCATTGATCCTTTGAGGCCAGATTGAGTATGATGTATTTAGAAGCTGGAAAGGTTTGGTCTCAGAATATTTGGGAGCCAAAAATTGGGTACCTGAGACATAATTAATGGAAACTGCCCCAAGTTTATCTGTTGGTATCTATAATTATTATTTTTGGTGCCCTCTTAAATAATTTTGTCTTTTGCCTTCTTTTACGAGATTTCATACCAATAGTAAAAATAACTAAAATTAAATTTAACAAAGTAAATAAGTAA

Fln Alignment:

sp_v1.1_unigene22487___MAENENLPPRVIKEIAKELKSLDESPPGGIKVVVNDDNFSTIFADIEGPAGTPYESGVFRMKLVLTPDFPNSPPKGYFVTKIFHPNIANNGEICVNTLKKDWNPTLGLRHVLLVIRCLLVEPFPESALNEQAGKMLMEDYEAYAKHARLYTSIHALKPKLKSKVAISESTALNEGPKNTLVTSPAPLVPCTTNKENNIQDPSINVASTEAIGVGASTVHKKKDLASTKVHV
D5ADG8_______________MAENENLPPRVIKEIAKELKSLDESPPGGIKVVVNDDNFSTIFADIEGPAGTPYEGGVFRMKLVLTPDFPNSPPKGYFVTKIFHPNIANNGEICVNTLKKDWNPTLGLRHVLLIIRCLLVEPFPESALNEQAGKMLMEDYEAYAKHARLYTSIHALKPKLKSKVAISESTALNEGPKNALVTSPSPLVPCTTNKENNIQDPSINVASTEAIGVGASAVHKKKDLASTKVHV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
73	33			66	0.997452
78			33	66	0.997452
79			33	66	0.997452
534	25	75			1.0
1089		75		25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain