SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22485

Length: 1031 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22485

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S18 (RPS18B)	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	pointed first leaf	-	-	97%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	97%
Blast2go	nucleolus	GO:0005730	Cellular Component	97%
Blast2go	vacuole	GO:0005773	Cellular Component	97%
Blast2go	plasma membrane	GO:0005886	Cellular Component	97%
Blast2go	cell wall	GO:0005618	Cellular Component	97%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	97%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein S13	IPR001892	-	97%
Blast2go	Ribosomal protein S13-like, H2TH	IPR010979	-	97%
Blast2go	Ribosomal protein S13, conserved site	IPR018269	-	97%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	C %	T %	Probability
773	2	97	0.999278
823	6	91	0.999995
919	14	85	0.993533
996	80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain