SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22477

Length: 2148 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22477
CGTCGTGACCTTGGCTGTCACTCAGTTGTTTTTCGTTCCTGTGGTTGCTAGTTGATTGTCTGGGTTCGAATTCAGTTGTGGTCGTCGACTGTGAAAATGGCCATGGCAATGAACGAAGACAGTATTTTCGAATTCGAAGGAGAGGACGAGCTTTCTTCAATGACGACAGAAGAGCTTACCAGAGGAGCTCGTATGCTAGATACCGAAAATCGGGTTTTCAGGGATGAAGCTCAGAGGACGAATCTAGAGTTAGATACAACGAAAGAAAAGATAAAGGAGAACCAAGAGAAAATCAAACTGAACAAGCAGCTTCCTTATTTGGTTGGCAATATCGTCGAGATCTTGGAAATGAACCCCGAGGAGGAAGCAGAAGAAGATGGCGCAAATGTTGATTTGGACTCACAAAGGAAGGGAAAATGTGTAGTTTTGAAGACATCAACGCGGCAAACAATCTTTTTGCCTGTGGTAGGGCTTGTAGATCCAGATAAACTGAAACCTGGAGATCTAGTGGGAGTTAATAAAGACAGCTATTTAATACTTGACACACTTCCATCGGAGTATGATTCTCGTGTGAAGGCCATGGAAGTAGATGAAAAGCCAACTGAGGATTACAATGACATAGGAGGCCTTGAAAAACAGATTACAGAATTGGTTGAGGCCATTGTCTTGCCAATGACTCACAAGGAGAGGTTCCAGAAACTTGGTATTCGCCCACCGAAAGGGGTCCTACTTTATGGGCCTCCAGGAACTGGAAAAACACTCATGGCTCGTGCATGTGCTGCACAAACAAATGCAACATTTTTAAAACTTGCTGGGCCACAACTAGTCCAGATGTTCATTGGAGATGGTGCCAAGCTTGTTCGAGATGCATTTCAACTTGCAAAGGAGAAATCTCCTTGCATTATCTTTATAGATGAGGTCGATGCTATTGGAACAAAGCGTTTTGACAGTGAAGTAAGTGGGGATAGAGAAGTACAACGCACTATGCTAGAGTTACTGAATCAGCTCGATGGATTTAGCAGTGATGATCGTATAAAGGTCATAGCAGCAACAAATCGTGCAGATATATTAGATCCAGCTCTTATGCGTTCAGGCCGTCTAGACCGGAAGATAGAATTTCCTCACCCAACAGAGGATGCACGTGCGCGAATTTTACAGATTCATTCAAGAAAAATGACTGTTCATCCAGATGTCAACTTCGAAGAGCTTGCACGTTCTACTGATGATTTCAATGGTGCACAGTTGAAAGCTGTTTGTGTAGAAGCTGGTATGCTTGCGCTGCGTCGAGATGCCACTGAGGTTACCCATGAAGATTTCAATGAAGGAATAATTCAAGTTCAAGCTAAAAAGAAGTCCAGCTTGAACTACTATGCGTAAACCTGCTTTTCGTTGGATCAGAATTTGCTGCTCAGAGTTCTTTCTCGTGATGAATAAATGCATATTTTAACTCTCCAGTTTTCCCGACTAGTATTTGCTATTCATTTATGTAACCTTAGAAGGTAGGAAAAGGACATGCACTTCTTGTAAATAGAATGACTCAGAAAAGGTAAAACTAAGGCAAAGTTGATTTCTCATTGCCATTGATACTAGATTTCACAATGCAACGCATGGGCTTTATCTCTGGTTCAAGAGTGAATTCGCTGTTGCAAATATCTGGGCAGTCCTTAGTGTGGCTTTTGGTGGATGTCCGAGTACTTGAGTACTTGTTAGAATGTAGTAGGCTATGCATTTTTCTTTTCTCTTCCATTTTAAAAAGCCTAATGCCCTCATAAAATCTTACATGAATATGTAGCAGGAGGAATGGTTATAAGCAAAAGCAAGGCCTTTAACGTGTACTTGTGACTCTTTTTGGTTCCCCGTTGTAAATTTGGTGGTTTGTTGGGCATCTCTAATGCCAGCGCGATGGAGTTATCGGGGTTTTTACATTTCTATTTTATTCTGTGTACAAGACTTGTTCAGTTGAAGACGAGGTGTCAGCATCTTTTTTGAACGGTGCTTGAATTGGGCTCTTATACCTGACGTCTCTTTATCAATCCCTTTTTCATAGTTACACGTTCAAATTTGAAATCGACATGATACTGAAAATAAAGGCGTTGTCTATGAGGTCACAAATTTGCCCAGACGGCAGTTTTAAGCAGGAATCGGGTC

Ace file of the UniGene sp_v1.1_unigene22477

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S protease regulatory subunit 6A homolog A n=4 Tax=rosids RepID=PS6AA_ARATH	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	26s proteasome aaa-atpase subunit rpt5a	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	proteasomal protein catabolic process	GO:0010498	Biological Process	96%
Blast2go	embryo sac development	GO:0009553	Biological Process	96%
Blast2go	pollen development	GO:0009555	Biological Process	96%
Blast2go	binding	GO:0005488	Molecular Function	96%
Blast2go	ATPase activity	GO:0016887	Molecular Function	96%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	96%
Blast2go	cytoplasm	GO:0005737	Cellular Component	96%
Blast2go	nucleus	GO:0005634	Cellular Component	96%

Source	InterPros	Term	Type	Identity
Blast2go	AAA+ ATPase domain	IPR003593	-	96%
Blast2go	ATPase, AAA-type, core	IPR003959	-	96%
Blast2go	ATPase, AAA-type, conserved site	IPR003960	-	96%
Blast2go	26S proteasome subunit P45	IPR005937	-	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX40

Fln msg:

Fln protein: MAMAMNEDSIFEFEGEDELSSMTTEELTRGARMLDTENRVFRDEAQRTNLELDTTKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDGANVDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQITELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEVDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEDARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA*

Protein Length: 428

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGTTTTTCGTTCCTGTGGTTGCTAGTTGATTGTCTGGGTTCGAATTCAGTTGTGGTCGTCGACTGTGAAA_-_ATGGCCATGGCAATGAACGAAGACAGTATTTTCGAATTCGAAGGAGAGGACGAGCTTTCTTCAATGACGACAGAAGAGCTTACCAGAGGAGCTCGTATGCTAGATACCGAAAATCGGGTTTTCAGGGATGAAGCTCAGAGGACGAATCTAGAGTTAGATACAACGAAAGAAAAGATAAAGGAGAACCAAGAGAAAATCAAACTGAACAAGCAGCTTCCTTATTTGGTTGGCAATATCGTCGAGATCTTGGAAATGAACCCCGAGGAGGAAGCAGAAGAAGATGGCGCAAATGTTGATTTGGACTCACAAAGGAAGGGAAAATGTGTAGTTTTGAAGACATCAACGCGGCAAACAATCTTTTTGCCTGTGGTAGGGCTTGTAGATCCAGATAAACTGAAACCTGGAGATCTAGTGGGAGTTAATAAAGACAGCTATTTAATACTTGACACACTTCCATCGGAGTATGATTCTCGTGTGAAGGCCATGGAAGTAGATGAAAAGCCAACTGAGGATTACAATGACATAGGAGGCCTTGAAAAACAGATTACAGAATTGGTTGAGGCCATTGTCTTGCCAATGACTCACAAGGAGAGGTTCCAGAAACTTGGTATTCGCCCACCGAAAGGGGTCCTACTTTATGGGCCTCCAGGAACTGGAAAAACACTCATGGCTCGTGCATGTGCTGCACAAACAAATGCAACATTTTTAAAACTTGCTGGGCCACAACTAGTCCAGATGTTCATTGGAGATGGTGCCAAGCTTGTTCGAGATGCATTTCAACTTGCAAAGGAGAAATCTCCTTGCATTATCTTTATAGATGAGGTCGATGCTATTGGAACAAAGCGTTTTGACAGTGAAGTAAGTGGGGATAGAGAAGTACAACGCACTATGCTAGAGTTACTGAATCAGCTCGATGGATTTAGCAGTGATGATCGTATAAAGGTCATAGCAGCAACAAATCGTGCAGATATATTAGATCCAGCTCTTATGCGTTCAGGCCGTCTAGACCGGAAGATAGAATTTCCTCACCCAACAGAGGATGCACGTGCGCGAATTTTACAGATTCATTCAAGAAAAATGACTGTTCATCCAGATGTCAACTTCGAAGAGCTTGCACGTTCTACTGATGATTTCAATGGTGCACAGTTGAAAGCTGTTTGTGTAGAAGCTGGTATGCTTGCGCTGCGTCGAGATGCCACTGAGGTTACCCATGAAGATTTCAATGAAGGAATAATTCAAGTTCAAGCTAAAAAGAAGTCCAGCTTGAACTACTATGCGTAA___ACCTGCTTTTCGTTGGATCAGAATTTGCTGCTCAGAGTTCTTTCTCGTGATGAATAAATGCATATTTTAACTCTCCAGTTTTCCCGACTAGTATTTGCTATTCATTTATGTAACCTTAGAAGGTAGGAAAAGGACATGCACTTCTTGTAAATAGAATGACTCAGAAAAGGTAAAACTAAGGCAAAGTTGATTTCTCATTGCCATTGATACTAGATTTCACAATGCAACGCATGGGCTTTATCTCTGGTTCAAGAGTGAATTCGCTGTTGCAAATATCTGGGCAGTCCTTAGTGTGGCTTTTGGTGGATGTCCGAGTACTTGAGTACTTGTTAGAATGTAGTAGGCTATGCATTTTTCTTTTCTCTTCCATTTTAAAAAGCCTAATGCCCTCATAAAATCTTACATGAATATGTAGCAGGAGGAATGGTTATAAGCAAAAGCAAGGCCTTTAACGTGTACTTGTGACTCTTTTTGGTTCCCCGTTGTAAATTTGGTGGTTTGTTGGGCATCTCTAATGCCAGCGCGATGGAGTTATCGGGGTTTTTACATTTCTATTTTATTCTGTGTACAAGACTTGTTCAGTTGAAGACGAGGTGTCAGCATCTTTTTTGAACGGTGCTTGAATTGGGCTCTTATACCTGACGTCTCTTTATCAATCCCTTTTTCATAGTTACACGTTCAAATTTGAAATCGACATGATACTGAAAATAAAGGCGTTGTCTATGAGGTCACAAATTTGCCCAGACGGCAGTTTTAAGCAGGAATCGGGTC

Fln Alignment:

sp_v1.1_unigene22477___MAMAMNEDSIFEFEGEDELSSMTTEELTRGARMLDTENRVFRDEAQRTNLELDTTXXXXXXXXXXXXXXXXLPYLVGNIVEILEMNPEEEAEEDGANVDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQITELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEVDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEDARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA
A9NX40_______________MATAMTEDSIFE--GEDELSSMTTEELTRGARMLESENRVLRDEAQRTNLELDTTKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEEEAEEDGANVDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQITELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKDKSPCIIFIDEVDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEDARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
509			88	11	0.923564
718		87		12	0.992554
720		85	14		0.993533
721	85			14	0.993533
1156	12		87		0.992554
1581	87		12		0.992554
1583			12	87	0.992554
1584	12		87		0.992554
1587	87			12	0.992554
1589			12	87	0.992554
1591	87	12			0.992554
1593	87		12		0.992554
1596	87	12			0.992554
1599		12		87	0.992554
1663	12			87	0.992554
1664		87	12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain