SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22468

Length: 1378 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22468

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tify multi-domain protein	-	-	7.0e-10	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	jasmonate zim-domain protein 1	-	-	0.0	56%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Tify	IPR010399	-	0.0	56%
Blast2go	CO/COL/TOC1, conserved site	IPR018467	-	0.0	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRV6

Fln msg:

Fln protein: MSTSASAALEFLRVQSASETNGTAVNGSNSLESCPGKQFAKPRLMQDLSRIRPQMMQKVLSSIALSEDKKTDFIHVNREAESLNGKSEAPSQAELIELFPLSTGRFSSNPRVPETNITLPFATGQTDPDSRSAPAKATEQPSTAQLTIFYNGAVNVYDLPADKAQAIMSLASSDSSINTGTSPTTSSKTEQMSESLPSKSQPKAVNENQTQRPPIGLEIVRKLSLQRFLQKRKERINNVAPYTTMKPATLQSKEGKDSADQIFLSLAGPQQPF*

Protein Length: 275

Fln nts: ATGCGGAATATACACCTGTAACTTGCGAAGCAGCGTCTTCTGGTCACCGATTCCATTATTTATCTTCTTATTCGCCAAGGATTCGGAAAAATTCTCTACATATATTGGGCTCTTTGATTGATATCCGGGAGTAGCAAAGCTTTAAGAACAGGTAGAAGCTTGAAGAAAATTAGGGATTTATAGGAATATTTTGTAAGCA_-_ATGTCGACAAGTGCATCTGCGGCTTTGGAGTTTCTGCGCGTTCAGAGCGCCTCTGAAACTAATGGAACGGCTGTGAATGGAAGTAACAGTTTGGAATCATGCCCTGGAAAACAATTCGCCAAGCCGAGATTAATGCAAGATCTGTCGCGGATTAGACCGCAAATGATGCAAAAGGTGCTTTCATCAATCGCGCTTTCAGAGGACAAGAAGACCGATTTCATTCATGTCAACCGTGAGGCCGAGAGCTTAAACGGAAAATCTGAGGCACCGAGTCAAGCGGAATTGATAGAATTGTTTCCACTAAGCACTGGCCGTTTCAGTTCAAACCCTAGAGTTCCGGAAACAAATATAACCTTGCCTTTTGCAACCGGTCAAACGGATCCGGATTCGAGATCTGCTCCAGCAAAAGCTACGGAGCAACCGTCCACAGCTCAACTCACTATTTTCTATAACGGAGCGGTGAATGTTTACGATTTGCCAGCTGACAAGGCCCAAGCCATTATGAGTCTTGCTAGCTCTGATAGCTCGATCAACACAGGAACATCTCCGACTACCAGCAGTAAAACCGAGCAGATGTCAGAATCGCTGCCTTCAAAGTCTCAGCCAAAAGCTGTCAACGAAAATCAAACTCAAAGGCCTCCAATAGGCCTGGAAATAGTCAGGAAATTATCTCTGCAACGCTTCCTCCAGAAGCGCAAGGAAAGAATCAACAACGTGGCTCCTTACACCACGATGAAGCCGGCGACATTGCAGTCGAAAGAAGGGAAGGATTCGGCAGACCAGATATTCCTTTCGTTGGCGGGGCCACAGCAACCATTTTAA___AATGTCGGTGGATGCTCTCGACTTTATTAAATTTATCACGCTGCAATTCTTTTATACCTAAGTGGACTGGAACGGAGCAACGCGTCTTCCGGATTCCCACTTCATGACACGTGATAGTCGTGGGCGGCAGGCAAAAGTGCAACTGGCCCCAATAGTCAGTTTTGTCTCCACATTGATAGCGTGAAGCTACATAGCAATTTCTGGAGTGGGCAGCCTTCATTCTGCACCACAAACATTATTCGTATGATTTTTTAATTGATTGATGACCAATTTTGTTCGTACACCATATGGTTTTAGTTTGAATATTTATTGAAATCATGGAATTGTAAAACGACAAAGTTACAAAATCTTTATATT

Fln Alignment:

sp_v1.1_unigene22468___LEFLRVQSASETNGTAVNGSNSLESCPGKQFAKPR-LMQDLSRIRPQMMQKVLSSIALSEDKKTDFIHVNREAESLNGKSEAPSQAELIELFPLSTGRFSSNPRVPETNITLPFATGQTDPDSRSAPAKATEQPSTAQLTIFYNGAVNVYDLPADKAQAIMSLASSDSSINTGTSPTTSSKTEQMSESL----PSKSQPKAVNENQTQRPPIGLEIVRKLSLQRFLQKRKERINNVAPYTTMKPATLQSKEGKDSADQIFLSLAGPQQPF
C0PRV6_______________LEFLRFQNASEANGTVVNGCTSLEFCPGKQLAKPRSVMPDLSRIRPQMMQKVLSSIGLSEDKK---------AKSFNGQSEASSHTELMELFPVSTG-FGSNPRVAETNITLPFATGQTDPDSRSVPAKAPEQSSTAQLTIFYNGAVHVYDVPAEKAQAIMSFASSNSSINTGTSPTTSSQIEQISKPFPSKPPSKPQSNAVNEKQTHRPPIGLEIVRKLSLQRFLQKRKERINNVAPYSSMKTATLPSKVEKDTADQIFLSLAGPTQHF

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
304		88	11		0.999937
306		11	88		0.999937
308	83			5	0.999887
313	77			5	1.0
323		9	90		0.999842
324	4	86		9	0.999642
521			11	88	0.923564
524	88		11		0.923564
525	88			11	0.923564
526	88		11		0.923564
527	11	88			0.923564
531	88			11	0.923564
535		11		88	0.923564
538		88	11		0.923564
539			88	11	0.923564
540		11	88		0.923564
542	88	11			0.923564
543	88			11	0.923564
575	83			16	0.994512
576	83			16	0.994512
579		16	83		0.994512
582		83	16		0.994512
583		83		16	0.994512
585	16		83		0.994512
586	83		16		0.994512
588			16	83	0.994512
589	16	83			0.994512
590		16	83		0.994512
593	83		16		0.994512
594		16		83	0.994512
618		80		20	0.995493
714	71		28		1.0
715		14	71		0.984337
719	14			85	0.993533
720		14	85		0.993533
721	85			14	0.993533
722		14		85	0.993533
965	11		77		0.968132
1079		23	76		1.0
1251	88			11	0.923564
1253	88		11		0.923564
1254	88	11			0.923564
1257	87		12		0.992554
1259			11	88	0.923564
1261			12	87	0.992554
1263		87	12		0.992554
1264	12		87		0.992554
1265		12		87	0.992554
1267			12	87	0.992554
1269	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain