SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22459

Length: 1337 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22459

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione S-transferase zeta class n=1 Tax=Pinus brutia RepID=D2XZY3_9CONI	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	glutathione s-transferase-like protein	-	-	80%

Source	InterPros	Term	Type	Identity
Blast2go	Glutathione S-transferase, N-terminal	IPR004045	-	80%
Blast2go	Glutathione S-transferase, C-terminal	IPR004046	-	80%
Blast2go	Maleylacetoacetate isomerase	IPR005955	-	80%
Blast2go	Glutathione S-transferase, C-terminal-like	IPR010987	-	80%
Blast2go	Thioredoxin fold	IPR012335	-	80%
Blast2go	Thioredoxin-like fold	IPR012336	-	80%
Blast2go	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ84

Fln msg:

Fln protein: MASFAQENPATSVTSSRLKLYSYWRSSCSWRVRIALNLKGLPYEYKAVNIVQGEQFSEEFTKLNPLQFVPTLVDGDTIVSDSLAILLYLEDKFPEHPLLPDDHHLKAISLQAASIIGSNIQPLQNLVILNLIEEKLGAEERLAWPKPFIERGFTALEKLLKDVAGKYSVGDQLTLADIFLVPQVFGARRFNVDMSKFPTLNRIDKELAELPEFQAALPARQPDAKA*

Protein Length: 228

Fln nts: ATGGGGGCATACCGACAACCGAAAAGGAAAGTTCTTGATATGAGTCCACACGTGGGGAAATGAAGCTAAGTGTCAGACTTCATTTCAAACACGCATCTACAGATCGGAGTCACCTTGCAGTCCCTATCTTCGAACGCTCGCAATTCACTTTGTGAAGATTCGCTGATCAATTTATAACTATCGACTTATATACCGTCTCGAAACTCTATCCAATTCACAAGTTCCCGTCTCATCTCTTTGCAGCAGGCATCATCCTCACGATTGAGCTCATATATTATCATTC_-_ATGGCATCCTTTGCTCAGGAAAACCCCGCAACCAGTGTTACCTCTTCTAGACTGAAGCTGTACTCTTACTGGCGCAGTTCATGTTCTTGGCGAGTCAGGATTGCTCTCAATCTGAAAGGGTTACCATATGAGTACAAAGCAGTGAATATTGTGCAAGGAGAGCAATTTAGTGAAGAGTTTACCAAATTGAACCCCCTTCAGTTTGTTCCAACATTGGTGGATGGAGATACAATTGTTTCGGATTCGCTTGCCATATTGTTGTACTTGGAGGACAAATTTCCTGAACACCCACTACTCCCAGATGATCATCATTTGAAAGCAATTAGCTTACAGGCCGCCTCTATTATTGGATCAAACATACAACCTCTTCAGAACTTGGTGATCTTGAATTTGATTGAGGAGAAACTGGGAGCAGAGGAGCGTTTGGCATGGCCTAAACCGTTCATAGAGAGAGGTTTTACTGCTTTGGAGAAGTTGTTGAAAGATGTTGCAGGGAAATATTCTGTAGGAGATCAGCTTACATTAGCAGATATCTTTCTTGTCCCACAAGTTTTTGGTGCGAGGCGTTTCAACGTTGACATGTCAAAATTCCCAACTTTGAATAGAATTGACAAAGAATTAGCAGAACTTCCAGAATTCCAGGCTGCTCTGCCTGCAAGACAACCTGATGCAAAAGCATGA___TTTTACAAGGTTTGGCAGTATAATATTAAGATTTACAACTCCGTTTTTGTGTAAGTTTTACCATATTTCATATTTCATATTTCACTCTAAGCATTAATACTCTGTTAGTTTGAGAGGGAGATTGCTATGACCTATTACCTTCTAATAATCTTGCAATTAGTACTTGCAGTAATGTATGTAATTGACAAAGGGGACTATCTGCTAAAATTGTGCCTAAGCAGAACATAAATTTCTTAAGGCTTTCCATACTTCATGTAAAACTACCACTTTCAGTGGTTCAAACTTCAGACATTGATAAATGTGGGATTCTGCAGACAAAGTGCTATAGTTATTAAGCAATAATTCTTATTATATCTAATTGCTAGCTTTTCAA

Fln Alignment:

sp_v1.1_unigene22459___MASFAQENPATSVTSSRLKLYSYWRSSCSWRVRIALNLKGLPYEYKAVNIVQGEQFSEEFTKLNPLQFVPTLVDGDTIVSDSLAILLYLEDKFPEHPLLPDDHHLKAISLQAASIIGSNIQPLQNLVILNLIEEKLGAEERLAWPKPFIERGFTALEKLLKDVAGKYSVGDQLTLADIFLVPQVFGARRFNVDMSKFPTLNRIDKELAELPEFQAALPARQPDAKA
A9NZ84_______________MASVAQENPGTSPTSAKLKLYSYWRSSCSWRVRIALNLKGLPYEYKAVNILQGEHHSEEFTKLNPLQFVPTLVDGDIIVSDSLAILLYLEDKFPEHPLLPDDLHLKAISLQAAALVGSNIQPFQNLAILNLIGEKLGPEERLAWPKHFIEKGFTALEKLLKGVAGKYSVGDQLTLADIFLVPQVFSARRFNVDMSKFPTLNRINQELAELPEFQAALPERQPDAKA

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
484	75		25		0.996473
497		75		25	0.996473
523	75		25		0.996473
579		20		80	0.995493
638	80	20			0.995493
639	80			20	0.995493
665	33		66		0.997452
696		33		66	0.997452
724	66		33		0.997452
733			75	25	0.996473
734	75		25		0.996473
736	75		25		0.996473
805	42		57		1.0
811	28	42		28	1.0
812	28		71		1.0
813	33		16	50	1.0
814		16	50	33	1.0
816		50	16	33	1.0
817	16	83			0.994512
820			66	33	1.0
821		33	50	16	1.0
822		66		33	1.0
824			83	16	0.994512
827	50	33		16	1.0
828		83		16	0.994512
829	40			40	1.0
832	20		20		0.99255
993	81		3	14	1.0
1050		50		50	1.0
1068	7		92		0.999602
1084			91	8	0.999766
1237	22		77		1.0
1299	69		30		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1026	1048	CATATTT CATATTT CATATTT CA	23

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain