SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22453

Length: 1638 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22453

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Casein kinase II alpha subunit n=17 Tax=Poaceae RepID=B6F107_ORYSJ	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	casein kinase ii alpha subunit	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	photoperiodism	GO:0009648	Biological Process	96%
Blast2go	inflorescence development	GO:0010229	Biological Process	96%
Blast2go	binding	GO:0005488	Molecular Function	96%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	96%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	96%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	96%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	96%
Blast2go	Protein kinase-like domain	IPR011009	-	96%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	96%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	96%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABN0

Fln msg:

Fln protein: MSKARVYADINVLRPKEYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINTTSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNSTDFKVLYPTLTDSDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDDLNVYLHKYRIELDPQLEALVGRHSRKPWSKFINADNQHLVSPEAVDFLDKLLRYDHQDRLTAREAMAHPYFNQVRAAESSRTRTQ*

Protein Length: 335

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTATCGACAAGAGTAAATTGTGGCCGTCGGACCTTGTGTCAGTGGAAGACGGAAGAGCTTCTAGTATCAGCAACAGTGGATTGTGGCCAACAGAAAGCGAATCAAAGGAAAAAGGGAGATTCGCCATAGGCAGATTTGTGCTCTGGTTGTTAATGCAGAAGAGAGAAATTATCTAATCTGGCGCAGAGAATAGGTAAAGCGATCAGGAGGCCTGGTGTC_-_ATGTCCAAGGCCCGCGTATATGCCGATATCAACGTTCTTCGCCCCAAAGAATATTGGGATTACGAATCGCTCGCAGTGCAATGGGGTGATCAGGATGATTATGAAGTGGTCCGTAAGGTTGGCAGAGGGAAATACAGCGAGGTATTTGAAGGGATCAATACCACAAGCAACGAGCGGTGTATTATCAAGATCTTGAAACCTGTTAAGAAAAAGAAGATCAAGAGAGAGATCAAAATTCTGCAAAACCTTTGTGGAGGTCCAAATATTGTAAAACTGCTTGATATAGTTCGGGACCAGCAATCCAAGACCCCTAGCCTGATTTTTGAATATGTAAACAGTACAGATTTTAAAGTACTCTATCCCACATTGACAGATTCTGATATACGATACTACATCTATGAGCTTCTCAAGGCTTTGGATTATTGCCACTCGCAGGGCATCATGCACCGTGATGTTAAGCCACATAATGTCATGATAGACCATGAATTGCGAAAGCTTCGCCTCATAGACTGGGGTCTTGCAGAGTTTTACCATCCAGGAAAGGAGTATAATGTTCGAGTAGCATCAAGATACTTCAAAGGTCCTGAACTCCTTGTTGACCTTCAAGATTATGATTATTCTCTGGATATGTGGAGCCTTGGTTGTATGTTTGCTGGAATGATCTTTCGGAAGGAGCCATTTTTTTATGGGCATGATAACCATGATCAATTAGTTAAGATAGCAAAGGTACTTGGTACAGACGATCTAAATGTTTATCTGCATAAATATCGTATTGAGCTTGATCCTCAGCTTGAAGCTCTTGTTGGAAGGCATAGTAGGAAACCTTGGTCAAAATTCATTAATGCTGACAATCAGCATCTAGTATCTCCAGAGGCTGTTGATTTTCTGGATAAGCTTCTTCGCTATGATCATCAAGATAGGCTTACTGCACGAGAAGCAATGGCACACCCCTACTTTAATCAAGTGAGAGCTGCAGAGAGCAGTAGAACTCGCACTCAGTAA___CCTGAATGATAGTAAGTTGAAGTGTCGTTAATTTTTACAAATGTTTCAATTTTAGAAGTGCAATTATTTTGTGCCATTCGCATTTGGCCTCACCTATCTCGCTTGGCATGAATGTTGGAAAAGAAATGGGGATATTACTTTGCAATTTCATATTTTGTGTCTGCAGAAATTGCAAAGGCAGGGCTTCGGTTGCTATCAGATATCATGGATTATAAGTAGATAATAGTCATGTAAATCAGAAACATCCTGAACATTGTGGAGTGAGATTTTAATATGCTTTTGGAAAAAGATAAAAAATATCTGCTTTAGTATTTTTTGTGCGGCTTTGTTCATAATTTAATGGATGCGCGGAATGGATTCAATGAATGTGGTAACCTCTAATTTTCATCATC

Fln Alignment:

sp_v1.1_unigene22453___MSKARVYADINVLRPKEYWDYESLAVQWGDQDDYEVVRKVGRGKYSEVFEGINTTSNERCXXXXXXXXXXXXXXXXXXXLQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNSTDFKVLYPTLTDSDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDDLNVYLHKYRIELDPQLEALVGRHSRKPWSKFINADNQHLVSPEAVDFLDKLLRYDHQDRLTAREAMAHPYFNQVRAAESSRTRTQ
D5ABN0_______________MSKARVYADINVLRAKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINTVNNERCIIKILKPVKKKKIKREIKILQNLRGGPNIVKLLDIVRDQQSKTPSLIFEYVNSTDFKVLYPTLTDSDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDDLNVYLHKYRIELDPQLEALVGRHSRKPWSKFINSDNQHLVSPEAVDFLDKLLRYDHQDRLTAQEAMAHPYFNRVRAAESSRTRTQ

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
165		20		80	0.995493
167		20		80	0.995493
168	20		80		0.995493
190	83	16			0.994512
192	83	16			0.994512
194	83			16	0.994512
197	83	16			0.994512
198	83	16			0.994512
201	83		16		0.994512
202			16	83	0.994512
206	83		16		0.994512
209	16			83	0.994512
210		16	83		0.994512
211			83	16	0.994512
214	16	83			0.994512
285			14	85	0.993533
306		14	85		0.993533
928	80	20			0.995493
1155	10	90			0.90298
1157	90		10		0.90298
1158			10	90	0.90298
1285	93		6		0.99903
1288			6	93	0.999364
1362	41		58		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain