SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22452

Length: 911 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22452

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pphak4; potassium transporter; K03549 KUP system potassium uptake protein	-	-	6.0e-37	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	protein	-	-	1.7288e-40	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	K+ potassium transporter	IPR003855	-	1.7288e-40	59%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: atg_distance in limit (1-15): atg_distance = 8, W2: There is no M at the beginning, your sequence is shorter than subject: 208 - 250

Fln protein: VVTLAVTHFITNLPAVHSVVVFVCVKYLPVNTVPAEERFRFQRVDPKEYKMYRCVAMYGYTDVRTGNVEFQSDLLNSLKEFVQSEYMYRLNEIEIRESQTFELTAKSVGSGDEGEVDAVVSSQSRRFVEVAEFESQQDIEFLQEARKAGVVYLVGDSQVSAKTGSRLLKRIVVNTVYRFMRRNCRQERTSLDIPHKSVLRVGMDYEI*

Protein Length: 209

Fln nts: CGTCGTGACCTTGGCTGTCACACATTTTATAACCAATCTCCCTGCTGTACATTCTGTTGTTGTATTTGTTTGTGTAAAGTATTTGCCCGTGAACACAGTCCCGGCTGAAGAACGCTTTCGATTCCAACGGGTTGATCCAAAAGAATACAAAATGTATCGATGTGTTGCGATGTACGGTTACACGGATGTGCGTACTGGGAACGTGGAATTCCAAAGCGACTTGCTGAACTCCTTGAAAGAATTTGTACAATCCGAGTATATGTACAGGCTTAATGAAATTGAAATAAGAGAGAGCCAGACATTTGAGTTGACAGCTAAATCAGTTGGGTCTGGAGATGAGGGTGAAGTCGATGCTGTGGTCTCTTCCCAGAGTCGACGATTCGTCGAAGTCGCCGAGTTTGAGTCGCAGCAGGACATTGAATTCTTGCAAGAAGCAAGAAAGGCAGGTGTGGTGTATTTGGTGGGAGATAGCCAGGTGAGTGCCAAGACTGGTTCTCGGTTGCTTAAGAGAATTGTGGTTAACACTGTATATCGATTTATGCGGAGGAATTGCAGACAAGAAAGGACTTCTTTGGATATTCCTCACAAAAGTGTTTTGCGCGTTGGCATGGATTACGAGATTTGA___TATCAGGGCTTCTTTTCTTATGTGCATTATGGTATAGTGTCTTTGTATGGAGATACAGGTTTATTTTTATGTGTCCGGCCAAAGCTAAGTGAGTTTTAGGTCTCTGACGATGAGAGCTGTCTCATCAGAGCGAAGTGGTGTCCGATGTGTGGGTTTTTACTAAAGTATTGTATCCTAAATATTTATAAAAAGGTGAAAGGTGTATGGTTTAAAGTATTGTATCCTAAATATTTATAAAAAGGTGAAAGGTGTATGGTTTGAATCCCAATAAAATAATACTTTTTAA

Fln Alignment:

sp_v1.1_unigene22452___THFITNLPAVHSVVVFVCVKYLPVNTVPAEERFRFQRVDPKEYKMYRCVAMYGYTDVRTGNVEFQSDLLNSLKEFVQSEY------------------------MYRLNEIEIRESQTFELTAKSVGSGDEGEVDAVVSSQSRRFVEVAEF------------ESQQDIEFLQEARKAGVVYLVGDSQVSAKTGSRLLKRIVVNTVYRFMRRNCRQERTSLDIPHKSVLRVGMDY
D5A8F8_______________THFVTNLPAFHQVLIFICIKSVPVPYVPPEERFLIGRVGPKEYRLYRCIVRYGYRDVHGDTDHFEDQLILNLGEFIRSEAKHSCSSDSYSADGRMAVIGTPVHGMESILSYETAEESIQSVNLSYLGSQTIQSIQDLIETDSPHLARRKKVRFLLPSSPDIDPDVKDELQELFQAREAGIAFILGHSYVKAKNDSSFLKKLAINAGYNFLRKNCRGPSVALRIPHISLLEVGMVY

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
192	14	85			0.993533
195	71	28			1.0
196		71	28		1.0
197			14	85	0.993533
203	14	14		71	0.984337
204		14	71	14	0.984337
205			14	85	0.993533
206			71	28	1.0
208	71		28		1.0
209	85	14			0.993533
210	14			85	0.993533
211			14	85	0.993533
212		71		28	1.0
213		28	71		1.0
215	85	14			0.993533
216	85			14	0.993533
217		14	85		0.993533
218	14	85			0.993533
242	75	12			0.975346
243			12	87	0.992554
245		12		87	0.992554
250	87	12			0.992554
251	87			12	0.992554
253		87	12		0.992554
254		87	12		0.992554
255		12	87		0.992554
256	87			12	0.992554
259	87	12			0.992554
262		12		87	0.992554
312		50		50	1.0
459	87	12			0.992554
460			12	87	0.992554
461		12		87	0.992554
462	12			87	0.992554
467	12		87		0.992554
469	87			12	0.992554
472		12		87	0.992554
509	88	11			0.999937
512	88			11	0.999952
552	93	6			0.999453
557	93			6	0.999364
874	33		33		0.997753
875	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain