SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22447

Length: 1410 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22447

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	74%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	74%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	74%
Blast2go	Protein kinase-like domain	IPR011009	-	74%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 53 aas, your sequence is shorter than subject: 470 - 656

Fln protein: RRDLGCHSSSWHLESL*ELLGLEMNIG*VIIAIAKYAIQEAVILSQ*FL*DR*QAPP*SSPTHLKPNARALIIGFGVLGVGVVILVVLLLILWYNHLKSSRTSPYDLTAVRLQRFTYRELKASTRSFNSTHRLGKGGFGVVYKGVLRNGKEIAVKRLDITSLQGEREFQNELSIIGGLRSPFVVSLLGYCADRTRRLLVYEHMQNRSLQEALFENDSPSKLDWETRFKIILDIAQALAFLHLECDPPIIHGDIKPSNVLLDARFSAKLADFGLARLKCDADFGPELFSQDLGRSQEFQCRSQDLWKSQDLGKSQDLNISQDFNMSYDLYKNQDVGKMNRDNANTKTDAVDYGEGSIGKLSGTKMANIIDGDGLSPRSVDKESEVDFALALQLQHQASSSSKIEYLSDNALVHEVVNSGDEEIGLQMKGKEILTEGEDWCKNCPSDAGTDDISSFDRSKELRASPSDCKDS

Protein Length: 471

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTCTTGGCACCTTGAGTCATTGTAGGAGCTGTTGGGTTTAGAGATGAATATAGGCTAAGTGATTATAGCCATAGCCAAATATGCCATCCAGGAGGCTGTTATATTATCCCAATAGTTCCTATAAGACAGATGACAAGCACCACCATGATCAAGCCCAACCCATTTAAAGCCCAATGCCAGGGCATTGATAATAGGATTTGGGGTACTGGGAGTTGGGGTGGTGATTTTAGTGGTGTTGCTGTTGATCCTGTGGTACAATCACTTGAAGAGCAGCAGAACCAGCCCTTATGATCTGACCGCTGTCAGGCTTCAGAGATTCACATACCGTGAGCTCAAAGCTTCTACCCGTTCATTCAACTCGACTCACAGGCTTGGGAAGGGAGGATTCGGTGTTGTTTACAAAGGGGTTCTCAGGAATGGCAAGGAAATTGCAGTCAAGAGGTTGGATATCACTTCTCTGCAAGGCGAAAGAGAATTTCAGAATGAATTGTCGATCATTGGGGGGCTCAGGTCTCCTTTTGTGGTTTCTCTGTTGGGGTACTGTGCTGATAGGACGAGGAGACTGCTAGTGTATGAGCATATGCAGAACAGAAGCTTGCAGGAGGCTCTGTTTGAGAATGATTCGCCTTCGAAGTTGGATTGGGAAACCAGGTTTAAGATAATTCTGGACATTGCCCAAGCGCTGGCCTTTCTGCACCTTGAGTGTGATCCACCCATTATTCATGGCGATATAAAGCCCAGCAATGTTCTTCTGGATGCCCGTTTCAGTGCGAAACTAGCTGATTTTGGGCTGGCCAGACTTAAGTGCGATGCTGACTTTGGGCCTGAGCTATTTAGTCAGGACCTTGGGCGAAGCCAAGAGTTTCAATGCAGAAGTCAGGATCTGTGGAAGAGCCAGGATCTAGGTAAGAGCCAAGACCTTAACATAAGCCAGGATTTTAATATGAGCTATGATCTTTATAAAAACCAGGATGTTGGAAAGATGAACAGAGATAATGCAAATACTAAAACAGATGCTGTTGACTATGGGGAGGGGAGCATTGGGAAGCTCTCGGGAACGAAGATGGCAAACATTATAGATGGAGATGGCCTGAGTCCAAGGTCTGTTGACAAGGAATCTGAGGTCGACTTCGCTCTGGCATTACAGTTGCAGCATCAAGCTTCTTCCTCTAGTAAAATTGAATATTTAAGTGATAATGCCCTGGTGCACGAGGTTGTCAATAGTGGGGATGAGGAAATTGGGTTACAGATGAAGGGAAAAGAGATTCTGACAGAGGGTGAGGATTGGTGCAAAAATTGCCCTTCGGATGCTGGAACCGATGATATCAGTAGCTTTGATAGGAGCAAGGAATTGAGAGCATCTCCCTCTGATTGCAAAGATTCG

Fln Alignment:

sp_v1.1_unigene22447___FTYRELKASTRSFNSTHRLXXXXXXXXXXXXLRNGKEIAVKRLDITSLQGEREFQNELSIIGGLRSPFVVSLLGYCADRTRRLLVYEHMQNRSLQEALFENDSPSKLDWETRFKIILDIAQALAFLHLECDPPIIHGDIKPSNVLLDARFSAKLADFGLARL
C0PRI9_______________FTYEDLEAATNGFSRTNLLGQGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHGKGQPN-MEWPTRLKIAIGAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
1083			40	60	1.0
1084			60	40	1.0
1086	40			60	1.0
1087	60	40			1.0
1088		40	60		1.0
1089			60	40	1.0
1090	60			40	1.0
1091	60		40		1.0
1093	60	40			1.0
1096			60	40	1.0
1097		40		60	1.0
1099	60	40			1.0
1100	60			40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain