SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22440

Length: 495 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene22440
CGTCGTGACCTTGGCTGTCACTCAACATAACTCTGCCCGCCATGATTGCAAACGCTCAGCAGATTTCATATACAAAAGCATGGAGCGACGCTAAGTGCACCAAACCCTTCGCAGTAAATCAATCCTCGTGCCAAGGCTGAAGTACAAAGAAGAAAAAAACCTCACAAGAATGGCGCGCGGGGACGAGAACGAAGATATGGAGACTCGACCGGTGTTCGAATCAGCAGCCAGAGGATCATTTATTAATATTTCAGCAGTGGGAGGATCTTCTTCCAGCGGCCATTCTATCTTGCAGTTTTCGCCGCTGCAGAGTACCGTGGACGAGGGTTTCTGGAGAAAATTAGCTGACCTAAAGCTCGAGGTCCTCGGCATCTCTGAAAATCCGCTCGACATCACAGGGTTCTATGCTCCAATGTTTCATGAACAGGTGTCAAATCATCTGAAATTGCTTTCTGATCACTACAGCCTGATACTGGTAGGGAACATCGGTCTCGA

Ace file of the UniGene sp_v1.1_unigene22440

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	autophagy protein, putative; K08337 autophagy-related protein 7	-	-	3.0e-14	60%
FL-Next	sp=Ubiquitin-like modifier-activating enzyme atg7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Blast2go	apg7 (autophagy 7) apg8 activating enzyme	-	-	1.54929e-14	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	senescence	GO:0010149	Biological Process	1.54929e-14	74%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q94CD5

Fln msg: Distance to subject end: 618 aas, your sequence is shorter than subject: 108 - 697

Fln protein: MARGDENEDMETRPVFESAARGSFINISAVGGSSSSGHSILQFSPLQSTVDEGFWRKLADLKLEVLGISENPLDITGFYAPMFHEQVSNHLKLLSDHYSLILVGNIGL

Protein Length: 109

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACATAACTCTGCCCGCCATGATTGCAAACGCTCAGCAGATTTCATATACAAAAGCATGGAGCGACGCTAAGTGCACCAAACCCTTCGCAGTAAATCAATCCTCGTGCCAAGGCTGAAGTACAAAGAAGAAAAAAACCTCACAAGA_-_ATGGCGCGCGGGGACGAGAACGAAGATATGGAGACTCGACCGGTGTTCGAATCAGCAGCCAGAGGATCATTTATTAATATTTCAGCAGTGGGAGGATCTTCTTCCAGCGGCCATTCTATCTTGCAGTTTTCGCCGCTGCAGAGTACCGTGGACGAGGGTTTCTGGAGAAAATTAGCTGACCTAAAGCTCGAGGTCCTCGGCATCTCTGAAAATCCGCTCGACATCACAGGGTTCTATGCTCCAATGTTTCATGAACAGGTGTCAAATCATCTGAAATTGCTTTCTGATCACTACAGCCTGATACTGGTAGGGAACATCGGTCTCGA

Fln Alignment:

sp_v1.1_unigene22440___ILQFSPLQSTVDEGFWRKLADLKLEVLGISENPLDITGFYAPMFHEQVSNHLKLLSDHYSL
Q94CD5_______________ILQFAPLNSSVDEGFWHSFSSLKLDKLGIDDSPISITGFYGPCGHPQVSNHLTLLSESLPL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
212		85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain