SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22393

Length: 1800 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22393

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein binding protein, putative	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	63%

Source	GOs	Term	Type	Identity
Blast2go	protein autoubiquitination	GO:0051865	Biological Process	63%
Blast2go	floral organ development	GO:0048437	Biological Process	63%
Blast2go	negative regulation of organ growth	GO:0046621	Biological Process	63%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	63%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	63%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	63%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQF2

Fln msg:

Fln protein: MNSNQQIEVHYINTGFPYTVTDSFMDLFEGLDYVHPDLALAEALQDQESVYWSLQTNSDKQGATGSATSNSRNGHTQTHEGNEQVNNTTDSTRGWDNNSQVNSDEALAHVLQETEDSVDITNMMAAASIEECNRGHRVGSSSSQSTWQDVVDPDNMTYEELVELGEAVGTHSRGLCPDLIASLPVSKYKTKLFSRRKNKDDRCVICHMDYKRGDRIITLPCKHPYHAVCITRWLQINKACPVCYVEVFG*

Protein Length: 251

Fln nts: CGTACGTGACCTTGGCTGTCACTCAAGCACGTCCCCGACAAGGGTCGTCGGGAATTAAAGAAAGAACGTCGTGACCTTGGCTGTCACTCAAAGGCGATAAAGAAGAAGGTGCTGTGTGAATGAGAAATAAATGTTATTATACCCAGTCGATCGATTCTCTGCGCCTGTGACATACAAAGATGCCAGGGATCCAATCGCGGGGTTTTCCAGTTTAAGTGCAGGAATCTTGTGGCAATGTAAACCTTCTCGGCAATAATTGGCGAGATCTGATCTGCCGTTCAATGCTGCAGTGGAAACTTGTTCGATCTCATGGTGAGATCGCGCCTTCATTGGACGGCTTCGAGTACAGTACTCTTTAAATTGACGCCGGCAAGCTTTTCTGGAGCTGTGAATTTGGAAGCATTGTAGAGCAGGGGAAGTCGGATTTGTTGTTACGATCTTTAGGAAAATAAGTGAAA_-_ATGAACAGCAATCAGCAGATTGAGGTGCATTATATAAACACAGGCTTTCCTTACACAGTTACTGATAGCTTTATGGACTTATTCGAAGGTCTCGATTACGTTCACCCCGATCTTGCTCTCGCCGAGGCCCTTCAGGATCAGGAAAGTGTTTATTGGTCACTTCAGACAAACTCTGACAAGCAGGGAGCCACGGGCTCTGCTACCAGTAACTCCCGTAATGGTCATACTCAGACACATGAAGGGAATGAACAAGTAAATAATACAACGGATAGCACCAGAGGCTGGGACAATAATTCGCAGGTCAATAGTGATGAAGCACTAGCACATGTTTTACAGGAGACAGAAGATTCTGTGGATATAACTAACATGATGGCAGCTGCTAGTATTGAAGAGTGCAACAGAGGACATCGTGTTGGTAGCAGCAGTTCTCAGAGTACATGGCAAGACGTTGTTGATCCAGATAATATGACATATGAGGAACTGGTCGAGTTAGGAGAGGCAGTCGGCACTCATAGCAGAGGCCTTTGCCCAGATTTGATTGCGTCCCTTCCAGTTTCAAAATATAAAACAAAGTTATTCTCAAGAAGGAAAAACAAAGATGATCGGTGCGTGATTTGCCATATGGATTATAAGAGAGGAGATCGAATCATCACTTTGCCATGCAAGCACCCCTACCATGCAGTCTGCATTACAAGATGGCTACAAATCAACAAGGCATGTCCTGTTTGTTATGTTGAAGTGTTTGGATAA___CCAAGGTGAAAGCACAAAGTATTGCCATCCGAAGGAGCTTGTATAAAGAGCACTTAGTCAAAGGAATGAGCAGTTTCCTTTGAAGGGACTAGGGGCTTGAATCAACAAGCATCGTAGCAAATACGTTCTACAAATACCTTTGAATTTGTCTACTCTTACAAGATAAATAAGCATGTGATTGCTGTACTTAGTGGAAGGCTGATATGCAGGAAAAATTTACCAGTAGTACAGAGGAGGTGCTGATTTTTCTTGCTCTGTAATATTTGTCTGAAAAACATACGATACTCTATATAGATGCCTAAGATATTCTTAGAATGTGAAACCGTAAAAGTTTAGAGGAAGGGCAACGATGTTTAGTATTCATTGGTACACCTTCGGCTATTTCTGTAGGAATGTGATACAATGGATCATGGATTGTAGCCTTGTCATTAGGCTAAATGAAAAAATGGCAGCATGCAAGCATGTTTTGAAGAACACATGTACTAGGTGCTAATAAGATATTTGCTTGGTTTGGTGTGTTAGCAAATATGACAATTTTGATCATGATTCAAAGTTTCCATCCCGCCATAATATGCCTTTATTACTAACAAAG

Fln Alignment:

sp_v1.1_unigene22393___MNSNQQIEVHYINTGFPYTVTDSFMDLFEGLDYVHPDLALAEALQDQESVYWSLQTNSDKQGATGSATSNSRNGHTQTHEGNEQVNNTTDSTRGWDNNSQVNSDEALAHVLQETEDSVDITNMMAAASIEECNRGHRVGSSSSQSTWQDVVDPDNMTYEELVELGEAVGTHSRGLCPDLIASLPVSKYKTKLFSRRKNKDDRCVICHMDYKRGDRIITLPCKHPYHAVCITRWLQINKACPVCYVEVFG
B8LQF2_______________MNGNQQLEVHYINTGFPYTVTDSFMDLFEGLDYVHPDLALAEALQDQESVYWSLQTYSEKQGATGSASSNSRNGHAQTHEGNEHVVNTTDSTRVWDNNSQVNNDEALAHVLQETEDPVDITNMMAATSIEECNRGHRVGSSSSQGTWQDIIDPDNMTYEELVELGEAVGTHNRGLCPDLISSLPVSKYKTKLFSRRKNRDDQCVICHMNYKRGDRMITLPCKHPYHAVCITRWLHINKACPVCYVEVFG

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
67	33	66			0.997452
69			33	66	0.997452
70	33	66			0.997452
86	66		33		0.997452
88			33	66	0.997452
89	33	66			0.997452
90	66			33	0.997452
693		83		16	0.994512
752	12			87	0.992554
767		12		87	0.992554
852	12			87	0.992554
1073		18		81	0.999994
1115	10		90		0.90298
1264	88			11	0.999937
1774		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain