SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22374

Length: 3224 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22374
CGTCGTGACCTTGGCTGTCACTCAATATTTAGCGGAGGTAGATGTTGTCCAAGTGAGGTTTTTGAATGAGGTTTAAGAAGGGGATGTCAGTGGGTGGGCCTGGTAGAGATATGATGTCGTGACCTTGGCTGTGACTGTAGTGGGATGGAGCGCAGCACTAGTATTAGCACCGGCGAAACATATATTGCTGAAAACTAGCATATGATGTTGGGTGGATTCGGTTTGGGTTCTTAGGTATATTGTCTCTGCTTAGAACGAAATATTCTGTGCAGAAAATGAAATCCGAATCGGCTTACATTGCTGAGCTGATGTGAAGAATCATACCCAAGTTCAGTTTTCATTTTTGGGGCTCATACCCAAGTTCGTTTTCATTCCTGGGGCCACTGTAGAAATTATACCCAAATCTATTCCATTATTGGGTCATTAAAAAAAGCATATCCGAGTGTGTTTCATTGTTGGGTTATTGGGAAAAGAATGCCCAAATCAATTTCTGTCACTGGGTTGGGTTTAAAATGCCGATAACACCAGCTTCTGCTTTTGTATATTGCCATCTTATACATATTTTATAGCGATGGTAGCGGTGGGTATTTCTAGTTTTTATTTGTTTTTGCTTTCTCAATACAAATCCATGGTTCTCGGCTGAGTCGAGTACAGTAAGTACTGCATTATGTGCCATAGGTCTACTGTTATAGCGGTAGTTTGTGTAGATTTGGAGGTTTTTAACCGTATTTGGAGATGGTGGATGAGCCGCTGCAGTTGCTACCCGCTCACTCAGAAGAGGTAGGGGATCCAGCAGGTTCTGCGCTGTTGGCTAGTGAGGTGGTGGTTGGGGTCAAGGAAGAAGTTGGTGAGGAAAATACCGAGGCCACCGAACTTCCCATGTCTCAGGAGAAGAAGCTCAGGTTCAAAGCTCAGGAGCAGCAGCAGTCCTATTGGGATCGTTGCATGTAGGCCCAGTGAGGAGATGGATGTCACGAGAGCTTTACGACTAGGCAGGCGTTACTCAGGATCGATGCAATCAGAAGAGTCAGCCTTGGATCGTGAACAGACTGTAACTGGTAATTCTGGCCGTCATCCACGTTCGGACAGCCCCCCTCTTCAGGCATTTGCATCAGGTGGACAGCATTCTGAAAGTAGTGCAGCTTACTTTCTTTGGCCACCATCAAACCGGCTTAACGGTACTGCTGAGGAGAGGGCAGCTTATTTTGGTGGCGTTCAGAAAGAAGTAGATTCAGAAACACTGGAGCACTTACCAAGCGGACATCAAGCTACCACATTGCTTGATTTGATGACAATCCGAGCATTTCACAGCAAAATACTGCGCCGTTATAGCCTTGGGACTGCAATTGGTTTTCGCATTAGACAGGGGGTGCTGACAAAAATTCCTGCTATTCTTGTGTTTGTGGCTAGAAAGGTGCATAAGCAATGGCTTCTTGATGTCCAGAGGCTACCTTCTGTTCTTGAGGGGCCTGGTGGTGTTTGGTGTGATGTTGATGTTGTTGAATTCTCATATTATGGTGCACCGGCAGCAACACCAAAGGAACAGTTGTATACGGAGCTTGTAGAAGGTTTGCGGGGAAGTGATCAAACCATTGGGTCTGGTTCACAGGTTGCAAGCCAAGAAACATATGGAACATTGGGAGCCATAGTTAAAAGTCGAACTGGCTCTCGTCAGGTTGGATTCTTGACAAACCGTCATGTAGCAGTTGATTTAGACTATCCCAACCAGAAGATGTTTCATCCATTGCCACCAAACCTTGGTCCTGGTGTCTACTTAGGTGCTGTTGAGAGGGCAACATCATTCATCACAGATGATCTGTGGTACGGCATTTTCGCTGGCATGAATCCAGAAACATTTGTGCGAGCAGATGGGGCTTTCATACCTTTTGCAGATAGTTTTGATGTTTCCAATGTTACAACTACAGTGAAAGGTGTTGGAGACATGGGTGAAGTCATGTTGGTAGACCTACAGGCTCCTGTTGGGAGCCTCATTGGTAAGCAAGTGGTGAAAGTAGGAAGAAGTTCTGGGTTGACAAGAGGAACTATAATGGCATATGCACTTGAATACAATGATGAAAAAGGCATCTGCTTTTTTACGGACTTCCTCGTTGTAGGAGAGAATAAACAAGCTTTTGATCTAGAAGGTGATAGTGGAAGCCTTATACTAGTTACTGAGGAAAGTGGTGAGAAGCCAAGGCCAGTTGGAATTATATGGGGTGGCACAGCAAACCGTGGGCGATTGAAACTGAAGAATGGTTCTGGTCCTGAAAACTGGACGAGTGGTGTTGATCTTGGCCGTCTGCTGGACTTACTTCAGCTTGATCTGATCACTGGTGCTGGAGGTCTTCGAGAAGCTGTTGAGGAACAAAAGCGGTGGTCATCAGCAGTGGCCATTGATTCAACCGTTGGGGAGTCGTCTCCAAGAGGGTACAGAATTGGTCCCTTGACTTTGGCTGAAAAGGAGAAAACAGAAGAGGCATGTCCACTTATGCAGTTTGATAATGATGACATGTCCAGCTTTCATACACAGCATTTGGGTCTCCAGAGTGGAGCTGAGGTGACCCCAATATTTAGGCAGTCAGAGTTCATGACAAGATTGGCTGAGCCTTCAACAAGTGTTGAGCACCAATTTATGAAGGATTTTCATAGATCACTGGGCCATCCAGAGCAGGCTAAAAGTCCAAAGTGTGAGAACCTATCTGCACTTAGGGATGGGAAAGATGGTTCCAGTGAGGACATTTCTATTGGCTTGCATCTGGGTGACCGAGATGCAAAAAGAAGGCGTTCAAATGCATAAATGTGTGCTTCTCCGAGGATGGAATTTATTCCATGTACAAGTAACTAAACAACTGAAGTTTTGGCAGTGCTAGCACTCAAATGAGAAAGCCAAATGGAAATTATATAGCAGTCAGCATTATTGTTCAATAGAGTCACATAAACTGATTTTTGTCTATTGACATGTTCCATTGCTTGTGTCAGTCAGTTTCTGTTTCCCAATTGCCATCTTGGTTTGTAGTTATTGTTCCTTTTATGTCCAAGAGTTTTTCTCTTATGAATCATGTAGGCAAAGAGAAGGAAATCAAACACATAAATGTGTCTTTGAGGATGGAAATTATTCCATGTACGAATAATTGAACTGAAGTTTTGGCAGTGCTAGCACTCAAATGGCAAAGCCAAATGGAAATTATGTAGCAGTCAGCATTATTGTTCCTTAGAGTAACATA

Ace file of the UniGene sp_v1.1_unigene22374

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase cysteine/serine, trypsin-like	IPR009003	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKZ8

Fln msg: Separated hits, possible frame ERROR between 942 and 950,

Fln protein: MVDEPLQLLPAHSEEVGDPAGSALLASEVVVGVKEEVGEENTEATELPMSQEKKLRFKAQEQQQSYWDxxxxRPSEEMDVTRALRLGRRYSGSMQSEESALDREQTVTGNSGRHPRSDSPPLQAFASGGQHSESSAAYFLWPPSNRLNGTAEERAAYFGGVQKEVDSETLEHLPSGHQATTLLDLMTIRAFHSKILRRYSLGTAIGFRIRQGVLTKIPAILVFVARKVHKQWLLDVQRLPSVLEGPGGVWCDVDVVEFSYYGAPAATPKEQLYTELVEGLRGSDQTIGSGSQVASQETYGTLGAIVKSRTGSRQVGFLTNRHVAVDLDYPNQKMFHPLPPNLGPGVYLGAVERATSFITDDLWYGIFAGMNPETFVRADGAFIPFADSFDVSNVTTTVKGVGDMGEVMLVDLQAPVGSLIGKQVVKVGRSSGLTRGTIMAYALEYNDEKGICFFTDFLVVGENKQAFDLEGDSGSLILVTEESGEKPRPVGIIWGGTANRGRLKLKNGSGPENWTSGVDLGRLLDLLQLDLITGAGGLREAVEEQKRWSSAVAIDSTVGESSPRGYRIGPLTLAEKEKTEEACPLMQFDNDDMSSFHTQHLGLQSGAEVTPIFRQSEFMTRLAEPSTSVEHQFMKDFHRSLGHPEQAKSPKCENLSALRDGKDGSSEDISIGLHLGDRDAKRRRSNA*

Protein Length: 689

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATTTAGCGGAGGTAGATGTTGTCCAAGTGAGGTTTTTGAATGAGGTTTAAGAAGGGGATGTCAGTGGGTGGGCCTGGTAGAGATATGATGTCGTGACCTTGGCTGTGACTGTAGTGGGATGGAGCGCAGCACTAGTATTAGCACCGGCGAAACATATATTGCTGAAAACTAGCATATGATGTTGGGTGGATTCGGTTTGGGTTCTTAGGTATATTGTCTCTGCTTAGAACGAAATATTCTGTGCAGAAAATGAAATCCGAATCGGCTTACATTGCTGAGCTGATGTGAAGAATCATACCCAAGTTCAGTTTTCATTTTTGGGGCTCATACCCAAGTTCGTTTTCATTCCTGGGGCCACTGTAGAAATTATACCCAAATCTATTCCATTATTGGGTCATTAAAAAAAGCATATCCGAGTGTGTTTCATTGTTGGGTTATTGGGAAAAGAATGCCCAAATCAATTTCTGTCACTGGGTTGGGTTTAAAATGCCGATAACACCAGCTTCTGCTTTTGTATATTGCCATCTTATACATATTTTATAGCGATGGTAGCGGTGGGTATTTCTAGTTTTTATTTGTTTTTGCTTTCTCAATACAAATCCATGGTTCTCGGCTGAGTCGAGTACAGTAAGTACTGCATTATGTGCCATAGGTCTACTGTTATAGCGGTAGTTTGTGTAGATTTGGAGGTTTTTAACCGTATTTGGAG_-_ATGGTGGATGAGCCGCTGCAGTTGCTACCCGCTCACTCAGAAGAGGTAGGGGATCCAGCAGGTTCTGCGCTGTTGGCTAGTGAGGTGGTGGTTGGGGTCAAGGAAGAAGTTGGTGAGGAAAATACCGAGGCCACCGAACTTCCCATGTCTCAGGAGAAGAAGCTCAGGTTCAAAGCTCAGGAGCAGCAGCAGTCCTATTGGGATCGxxxxxxxxxTAGGCCCAGTGAGGAGATGGATGTCACGAGAGCTTTACGACTAGGCAGGCGTTACTCAGGATCGATGCAATCAGAAGAGTCAGCCTTGGATCGTGAACAGACTGTAACTGGTAATTCTGGCCGTCATCCACGTTCGGACAGCCCCCCTCTTCAGGCATTTGCATCAGGTGGACAGCATTCTGAAAGTAGTGCAGCTTACTTTCTTTGGCCACCATCAAACCGGCTTAACGGTACTGCTGAGGAGAGGGCAGCTTATTTTGGTGGCGTTCAGAAAGAAGTAGATTCAGAAACACTGGAGCACTTACCAAGCGGACATCAAGCTACCACATTGCTTGATTTGATGACAATCCGAGCATTTCACAGCAAAATACTGCGCCGTTATAGCCTTGGGACTGCAATTGGTTTTCGCATTAGACAGGGGGTGCTGACAAAAATTCCTGCTATTCTTGTGTTTGTGGCTAGAAAGGTGCATAAGCAATGGCTTCTTGATGTCCAGAGGCTACCTTCTGTTCTTGAGGGGCCTGGTGGTGTTTGGTGTGATGTTGATGTTGTTGAATTCTCATATTATGGTGCACCGGCAGCAACACCAAAGGAACAGTTGTATACGGAGCTTGTAGAAGGTTTGCGGGGAAGTGATCAAACCATTGGGTCTGGTTCACAGGTTGCAAGCCAAGAAACATATGGAACATTGGGAGCCATAGTTAAAAGTCGAACTGGCTCTCGTCAGGTTGGATTCTTGACAAACCGTCATGTAGCAGTTGATTTAGACTATCCCAACCAGAAGATGTTTCATCCATTGCCACCAAACCTTGGTCCTGGTGTCTACTTAGGTGCTGTTGAGAGGGCAACATCATTCATCACAGATGATCTGTGGTACGGCATTTTCGCTGGCATGAATCCAGAAACATTTGTGCGAGCAGATGGGGCTTTCATACCTTTTGCAGATAGTTTTGATGTTTCCAATGTTACAACTACAGTGAAAGGTGTTGGAGACATGGGTGAAGTCATGTTGGTAGACCTACAGGCTCCTGTTGGGAGCCTCATTGGTAAGCAAGTGGTGAAAGTAGGAAGAAGTTCTGGGTTGACAAGAGGAACTATAATGGCATATGCACTTGAATACAATGATGAAAAAGGCATCTGCTTTTTTACGGACTTCCTCGTTGTAGGAGAGAATAAACAAGCTTTTGATCTAGAAGGTGATAGTGGAAGCCTTATACTAGTTACTGAGGAAAGTGGTGAGAAGCCAAGGCCAGTTGGAATTATATGGGGTGGCACAGCAAACCGTGGGCGATTGAAACTGAAGAATGGTTCTGGTCCTGAAAACTGGACGAGTGGTGTTGATCTTGGCCGTCTGCTGGACTTACTTCAGCTTGATCTGATCACTGGTGCTGGAGGTCTTCGAGAAGCTGTTGAGGAACAAAAGCGGTGGTCATCAGCAGTGGCCATTGATTCAACCGTTGGGGAGTCGTCTCCAAGAGGGTACAGAATTGGTCCCTTGACTTTGGCTGAAAAGGAGAAAACAGAAGAGGCATGTCCACTTATGCAGTTTGATAATGATGACATGTCCAGCTTTCATACACAGCATTTGGGTCTCCAGAGTGGAGCTGAGGTGACCCCAATATTTAGGCAGTCAGAGTTCATGACAAGATTGGCTGAGCCTTCAACAAGTGTTGAGCACCAATTTATGAAGGATTTTCATAGATCACTGGGCCATCCAGAGCAGGCTAAAAGTCCAAAGTGTGAGAACCTATCTGCACTTAGGGATGGGAAAGATGGTTCCAGTGAGGACATTTCTATTGGCTTGCATCTGGGTGACCGAGATGCAAAAAGAAGGCGTTCAAATGCATAA___ATGTGTGCTTCTCCGAGGATGGAATTTATTCCATGTACAAGTAACTAAACAACTGAAGTTTTGGCAGTGCTAGCACTCAAATGAGAAAGCCAAATGGAAATTATATAGCAGTCAGCATTATTGTTCAATAGAGTCACATAAACTGATTTTTGTCTATTGACATGTTCCATTGCTTGTGTCAGTCAGTTTCTGTTTCCCAATTGCCATCTTGGTTTGTAGTTATTGTTCCTTTTATGTCCAAGAGTTTTTCTCTTATGAATCATGTAGGCAAAGAGAAGGAAATCAAACACATAAATGTGTCTTTGAGGATGGAAATTATTCCATGTACGAATAATTGAACTGAAGTTTTGGCAGTGCTAGCACTCAAATGGCAAAGCCAAATGGAAATTATGTAGCAGTCAGCATTATTGTTCCTTAGAGTAACATA

Fln Alignment:

sp_v1.1_unigene22374___MVDEPLQLLPAHSEEVGDPAGSALLASXXXXXXXXXXXXXNTEATELPMSQEKKLRFKAQEQQQSYWDRxxxRPSEEMDVTRALRLGRRYSGSMQSEESALDREQTVTGNSGRHPRSDSPPLQAFASGGQHSESSAAYFLWPPSNRLNGTAEERAAYFGGVQKEVDSETLEHLPSGHQATTLLDLMTIRAFHSKILRRYSLGTAIGFRIRQGVLTKIPAILVFVARKVHKQWLLDVQRLPSVLEGPGGVWCDVDVVEFSYYGAPAATPKEQLYTELVEGLRGSDQTIGSGSQVASQETYGTLGAIVKSRTGSRQVGFLTNRHVAVDLDYPNQKMFHPLPPNLGPGVYLGAVERATSFITDDLWYGIFAGMNPETFVRADGAFIPFADSFDVSNVTTTVKGVGDMGEVMLVDLQAPVGSLIGKQVVKVGRSSGLTRGTIMAYALEYNDEKGICFFTDFLVVGENKQAFDLEGDSGSLILVTEESGEKPRPVGIIWGGTANRGRLKLKNGSGPENWTSGVXXXXXXXXXXXXXITGAGGLREAVEEQKRWSSAVAIDSTVGESSPRGYRIGPLTLAEKEKTEEACPLMQFDNDDMSSFHTQHLGLQSGAEVTPIFRQSEFMTRLAEPSTSVEHQFMKDFHRSLGHPEQAKSPKCENLSALRDGKDGSSEDISIGLHLGDRDAKRRRSN
B8LKZ8_______________MVDEPLQLLPAHSEEVADPVGSALLASEVVVGVKEEVGEENTVATELPMSQEKKLRFKSQEQQQSYWDRxxxRPSEEMDVTRALRLGRRYSGSMQSEESALDREQTVTGNSGRHPRSDSPPLQAFASGGQHSESSAACFRWPPSNRLNGTAEERAAYFGGVQKEVDSETLEHLPSGHQATTLLDLMTIRAFHSKILRRYSLGTAIGFRIREGVLTNIPAILVFVARKVHKQWLLDVQRLPSVLEGPGGVWCDVDVVEFSYYGAPAATPKEQLYTELVEGLRGSDQTIGSGSQVASQETYGTLGAIVKSRTGSRQVGFLTNRHVAVDLDYPNQKMFHPLPPNLGPGVYLGAVERATSFITDDLWYGIFAGMNPETFVRADGAFIPFADSFDVSNVTTTVKGVGDMGEVMLVDLQAPVGSLIGKQVVKVGRSSGLTRGTIMAYALEYNDEKGICFFTDFLVVGENKQAFDLEGDSGSLILVTEESGEKPRPVGIIWGGTANRGRLKLKNGSGPENWTSGVDLGRLLDLLQLEMITGAGGLREAVEEQKRWSSAVAIDSTVGESSPRGYRIGPLTLAEKEKTEEVCPLMQFDNDDMSSFHTQHLGIQSGAEVNPIFRQSEFMTKLAEPSTSVEHQFMKDFHRSLGHPEQAKSPKCENLSALRDGKDGSSEDISIGLHLGDREAKRRRSN

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
2427	88		11		0.923564
2628		88		11	0.923564
2629		88	11		0.923564
2630	88		11		0.923564
2631	88		11		0.923564
2655	85	14			0.993533
2674	14		85		0.993533
2680	77	22			0.999999
2684		77	22		0.999999
2685	77			22	0.999999
2686	77		22		0.999999
2688		22	77		0.999999
2689		22		77	0.999999
2690			77	22	0.999999
2693	77		22		0.999999
2694		22	77		0.999999
2695	77			22	0.999999
2696	77		22		0.999999
2697		77		22	0.999999
2699	22			77	0.999999
2700	77	22			0.999999
2703	11			88	0.923564
2883	72		27		1.0
3040	75		25		0.996473
3141	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain