SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22334

Length: 2258 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22334
CGTCGTGACCTTGGCTGTCACTTTGGGATTCTACCAACACGTGGCCTAACAAAATTGCCAAATATATCAGTCCTCAGAACCAGAAGCGAGTGGCATCGATCGCAGAAGATAGCAGAGCAAGGCGAAACAATACAGAGTAAATGGCCCTTCTTAGTTACGGCTGCCCTCCCAGCACCACCTGGAGAGTCCTAGAACAGCCTTGGCATTCAGGGGGCCAACAGTCATAGACATGAACTCAAATGCAAACCGCTCATTTACGTCTCTTCTTGGAGGAGGGCAAGGGGGCTACCGATGGCAGATACTGCCCACTGTTCAATAACCACAACGAGGCATTCTGTTACTGTCAAAGCTTCTTCTTCCACTTCTTCATCATCGTCTTCAGCTATTGCAGATTCTGAGGGCTTCCAGGTGACAGCAGTACCGACTAAGCCGGTAGAAGGTCAAAAGACTGGAACAAGTGGGCTGCGGAAGAAAGTTAAAGTTTTTATGCAATCAAACTATTTATCAAACTGGATTCAGGCTCTGTTTAACTCACTACCACCTGAAGACTACAAAGGCGGGTTGTTGGTCCTAGGTGGAGATGGACGCTATTTCAACAAGGAAGCTGCTCAGATCATCATAAAAATAGCAGCAGGCAATGGAGTAGGAAAAATTCTTGTTGGCAGGGATGGACTAATGTCAACACCTGCAGTGTCTGCAGTTATTCGAAAACATAAGGCTAATGGGGGTTTTATTATGAGTGCAAGCCACAATCCTGGAGGACCAGAAAATGACTGGGGTATCAAGTTTAATTATGGCAGTGGACAGCCTGCACCTGAATCTATCACTGACAAGATATATGGCAACACTCTGTCTATTTCAGAAATCAAGATGGCAAACATTTCAGATGTGGATTTGTCTAGATTGGGAGTTACCAAGTTTGGCAGTTTTACTGTAGAAGTTGTTGATCCTGTTTCTGATTATAGGGAGCTACTACAGAGTGTCTTTGATTTTGAACTTATAAAGACCTTCATAACACGGCCAGATTTCAGGTTCAAATTCGATGCTATGCATGCCATAACTGGTGCCTATGCAAAGCCTATCTTTGTGGATCAACTTGGAGCAAATGCAGATTCTATATCCAATGGAATTCCTTTAGAGGATTTTGGGAATGGACATCCAGACCCCAACCTAACGTATGCTAAGGAGTTGGTAACTATTATGTATAGTGTAGACGCACCAGATTTTGGAGCTGCTAGTGATGGAGATGGTGACCGAAACATGATTCTTGGAAAAAGCTTCTTTGTTACACCTTCAGATTCAGTAGCTATGATTGCAGCTAATGCTCAAGAAACAATTCCATACTTCAAGAATGGACCAAAGGGTCTGGCAAGGTCCATGCCAACAAGCGGTGCCCTTGACCTTGTAGCAAAGAAACTAAACCTTCCATTTTTTGAGGTCCCCACTGGTTGGAAATTCTTTGGCAATCTCATGGATGCAGGGAAACTTTCAATATGTGGGGAAGAAAGCTTTGGAACTGGTTCTGATCACATTCGTGAGAAAGATGGAATCTGGGCTGTATTAGCTTGGCTTTCAATTATCGCTTATAAAAATAAAGATAAAAAAGTTGGTGAAAAGCTGGTATCTGTCGCAGATATTGCTAAAGAACATTGGGCAACCTATGGCCGTAACTTCTTTTCTCGTTATGATTATGAGGAATGTGAATTAGAAGGAGCCAACAAAATGGTTGAACATCTACGTGGTTTGATTTCTAACATCAAAGGAGGAGAGATGTATGGAAACTACATGATCCAGTTTGCAGACGATTTTGCATATACTGATCCAGTTGATGGAAGTGTAGCCTTAAAACAAGGAATTCGCTTCGTTTTCACAGATGGATCTAGGATTATATTTCGCTTATCAGGCACAGGTTCAGCTGGCGCGACAATTAGACTTTATGTGGAACAATATGAGCCAGATGTTTCTAAACAAGAAGTGGATGCACAAACAGCATTGAAGCCTTTAATTGATGTTGCTTTGTCAATATCAAAGCTTAAGGAGTACACTGGACGTGAAAAACCCACAGTCATTACATGAACCAACATAATGTGTTTGAGTTATATTCCAAAGGATTAAAATTTTGTCATTATTATTTCCAGTGCAGGATGAGGGCCTTGGTGGCAATAGTGGCTGAATTATACTGAATTATATGCATGAGTTATAATGAATTATGTGTATCTGGGCAATGACTGAATTGATAAATAAAATATTTTTAACTT

Ace file of the UniGene sp_v1.1_unigene22334

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglucomutase, putative (EC:5.4.2.2); K01835 phosphoglucomutase [EC:5.4.2.2]	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	protein	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoglucomutase.	EC:5.4.2.2	-	0.0	90%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	90%
Blast2go	Pentose phosphate pathway	00030	90%
Blast2go	Galactose metabolism	00052	90%
Blast2go	Purine metabolism	00230	90%
Blast2go	Starch and sucrose metabolism	00500	90%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	90%
Blast2go	Metabolic pathways	01100	90%
Blast2go	Biosynthesis of secondary metabolites	01110	90%

Source	ECs	Term	Type	e value	Identity
AutoFact	Phosphoglucomutase.	EC:5.4.2.2	-	0.0	80%

Source	KEGGs	Term	Identity
AutoFact	Glycolysis / Gluconeogenesis	00010	80%
AutoFact	Pentose phosphate pathway	00030	80%
AutoFact	Galactose metabolism	00052	80%
AutoFact	Purine metabolism	00230	80%
AutoFact	Starch and sucrose metabolism	00500	80%
AutoFact	Amino sugar and nucleotide sugar metabolism	00520	80%
AutoFact	Metabolic pathways	01100	80%
AutoFact	Biosynthesis of secondary metabolites	01110	80%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	90%
Blast2go	starch biosynthetic process	GO:0019252	Biological Process	90%
Blast2go	response to nitrate	GO:0010167	Biological Process	90%
Blast2go	detection of gravity	GO:0009590	Biological Process	90%
Blast2go	phosphoglucomutase activity	GO:0004614	Molecular Function	90%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	90%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	90%
Blast2go	stromule	GO:0010319	Cellular Component	90%
Blast2go	apoplast	GO:0048046	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Blast2go	Alpha-D-phosphohexomutase superfamily	IPR005841	-	90%
Blast2go	Alpha-D-phosphohexomutase, C-terminal	IPR005843	-	90%
Blast2go	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	IPR005844	-	90%
Blast2go	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	IPR005845	-	90%
Blast2go	Alpha-D-phosphohexomutase, alpha/beta/alpha domain III	IPR005846	-	90%
Blast2go	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	IPR016055	-	90%
Blast2go	Alpha-D-phosphohexomutase, conserved site	IPR016066	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXL7

Fln msg: Overlapping hits, possible frame ERROR between 212 and 211,

Fln protein: MALLSYGCPPSTTWRVLEQPWHSxxANSHRHELKCKPLIYVSSWRRARGLPMADTAHCSITTTRHSVTVKASSSTSSSSSSAIADSEGFQVTAVPTKPVEGQKTGTSGLRKKVKVFMQSNYLSNWIQALFNSLPPEDYKGGLLVLGGDGRYFNKEAAQIIIKIAAGNGVGKILVGRDGLMSTPAVSAVIRKHKANGGFIMSASHNPGGPENDWGIKFNYGSGQPAPESITDKIYGNTLSISEIKMANISDVDLSRLGVTKFGSFTVEVVDPVSDYRELLQSVFDFELIKTFITRPDFRFKFDAMHAITGAYAKPIFVDQLGANADSISNGIPLEDFGNGHPDPNLTYAKELVTIMYSVDAPDFGAASDGDGDRNMILGKSFFVTPSDSVAMIAANAQETIPYFKNGPKGLARSMPTSGALDLVAKKLNLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYKNKDKKVGEKLVSVADIAKEHWATYGRNFFSRYDYEECELEGANKMVEHLRGLISNIKGGEMYGNYMIQFADDFAYTDPVDGSVALKQGIRFVFTDGSRIIFRLSGTGSAGATIRLYVEQYEPDVSKQEVDAQTALKPLIDVALSISKLKEYTGREKPTVIT*

Protein Length: 647

Fln nts: CGTCGTGACCTTGGCTGTCACTTTGGGATTCTACCAACACGTGGCCTAACAAAATTGCCAAATATATCAGTCCTCAGAACCAGAAGCGAGTGGCATCGATCGCAGAAGATAGCAGAGCAAGGCGAAACAATACAGAGTAA_-_ATGGCCCTTCTTAGTTACGGCTGCCCTCCCAGCACCACCTGGAGAGTCCTAGAACAGCCTTGGCATTCAxxxxxxGCCAACAGTCATAGACATGAACTCAAATGCAAACCGCTCATTTACGTCTCTTCTTGGAGGAGGGCAAGGGGGCTACCGATGGCAGATACTGCCCACTGTTCAATAACCACAACGAGGCATTCTGTTACTGTCAAAGCTTCTTCTTCCACTTCTTCATCATCGTCTTCAGCTATTGCAGATTCTGAGGGCTTCCAGGTGACAGCAGTACCGACTAAGCCGGTAGAAGGTCAAAAGACTGGAACAAGTGGGCTGCGGAAGAAAGTTAAAGTTTTTATGCAATCAAACTATTTATCAAACTGGATTCAGGCTCTGTTTAACTCACTACCACCTGAAGACTACAAAGGCGGGTTGTTGGTCCTAGGTGGAGATGGACGCTATTTCAACAAGGAAGCTGCTCAGATCATCATAAAAATAGCAGCAGGCAATGGAGTAGGAAAAATTCTTGTTGGCAGGGATGGACTAATGTCAACACCTGCAGTGTCTGCAGTTATTCGAAAACATAAGGCTAATGGGGGTTTTATTATGAGTGCAAGCCACAATCCTGGAGGACCAGAAAATGACTGGGGTATCAAGTTTAATTATGGCAGTGGACAGCCTGCACCTGAATCTATCACTGACAAGATATATGGCAACACTCTGTCTATTTCAGAAATCAAGATGGCAAACATTTCAGATGTGGATTTGTCTAGATTGGGAGTTACCAAGTTTGGCAGTTTTACTGTAGAAGTTGTTGATCCTGTTTCTGATTATAGGGAGCTACTACAGAGTGTCTTTGATTTTGAACTTATAAAGACCTTCATAACACGGCCAGATTTCAGGTTCAAATTCGATGCTATGCATGCCATAACTGGTGCCTATGCAAAGCCTATCTTTGTGGATCAACTTGGAGCAAATGCAGATTCTATATCCAATGGAATTCCTTTAGAGGATTTTGGGAATGGACATCCAGACCCCAACCTAACGTATGCTAAGGAGTTGGTAACTATTATGTATAGTGTAGACGCACCAGATTTTGGAGCTGCTAGTGATGGAGATGGTGACCGAAACATGATTCTTGGAAAAAGCTTCTTTGTTACACCTTCAGATTCAGTAGCTATGATTGCAGCTAATGCTCAAGAAACAATTCCATACTTCAAGAATGGACCAAAGGGTCTGGCAAGGTCCATGCCAACAAGCGGTGCCCTTGACCTTGTAGCAAAGAAACTAAACCTTCCATTTTTTGAGGTCCCCACTGGTTGGAAATTCTTTGGCAATCTCATGGATGCAGGGAAACTTTCAATATGTGGGGAAGAAAGCTTTGGAACTGGTTCTGATCACATTCGTGAGAAAGATGGAATCTGGGCTGTATTAGCTTGGCTTTCAATTATCGCTTATAAAAATAAAGATAAAAAAGTTGGTGAAAAGCTGGTATCTGTCGCAGATATTGCTAAAGAACATTGGGCAACCTATGGCCGTAACTTCTTTTCTCGTTATGATTATGAGGAATGTGAATTAGAAGGAGCCAACAAAATGGTTGAACATCTACGTGGTTTGATTTCTAACATCAAAGGAGGAGAGATGTATGGAAACTACATGATCCAGTTTGCAGACGATTTTGCATATACTGATCCAGTTGATGGAAGTGTAGCCTTAAAACAAGGAATTCGCTTCGTTTTCACAGATGGATCTAGGATTATATTTCGCTTATCAGGCACAGGTTCAGCTGGCGCGACAATTAGACTTTATGTGGAACAATATGAGCCAGATGTTTCTAAACAAGAAGTGGATGCACAAACAGCATTGAAGCCTTTAATTGATGTTGCTTTGTCAATATCAAAGCTTAAGGAGTACACTGGACGTGAAAAACCCACAGTCATTACATGA___ACCAACATAATGTGTTTGAGTTATATTCCAAAGGATTAAAATTTTGTCATTATTATTTCCAGTGCAGGATGAGGGCCTTGGTGGCAATAGTGGCTGAATTATACTGAATTATATGCATGAGTTATAATGAATTATGTGTATCTGGGCAATGACTGAATTGATAAATAAAATATTTTTAACTT

Fln Alignment:

sp_v1.1_unigene22334___MALLSYGCPPSTTWRVLEQPWHSxANSHRHELKCKPLIYVSSWRRARGLPMADTAHCSITTTRHXXXXXXXXXXXXXXXXX-IADSEGFQVTAVPTKPVEGQKTGTSGLRKKVKVFMQSNYLSNWIQALFNSLPPEDYKGGLLVLGGDGRYFNKEXXXXXXXXXXGNGVGKILVGRDGLMSTPAVSAVIRKHKANGGFIMSASHNPGGPENDWGIKFNYGSGQPAPESITDKIYGNTLSISEIKMANISDVDLSRLGVTKFGSFTVEVVDPVSDYRELLQSVFDFELIKTFITRPDFRFKFDAMHAITGAYAKPIFVDQLGANADSISNGIPLEDFGNGHPDPNLTYAKELVTIMYSVDAPDFGAASDGDGDRNMILGKSFFVTPSDSVAMIAANAQETIPYFKNGPKGLARSMPTSGALDLVAKKLNLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYKNKDKKVGEKLVSVADIAKEHWATYGRNFFSRYDYEECELEGANKMVEHLRGLISNIKGGEMYGNYMIQFADDFAYTDPVDGSVALKQGIRFVFTDGSRIIFRLSGTGSAGATIRLYVEQYEPDVSKQEVDAQTALKPLIDVALSISKLKEYTGREKPTVIT
A9NXL7_______________MALLRYGCPTSTTWRLLEQPWHPxCSSHGHELKCKPPIYVSSRRRARGLLITDTASCSITTRRHSVTVKASSTSSSPSSSSAIADSEGFQVTAIPTKPVEGQKTGTSGLRKKVKVFMQSNYLANWIQALFNSLPPEDYKGGLLVLGGDGRYFNKEAAQIIIKIAAGNGVGKILVGRDGLMSTPSVSAVIRKHKANGGFIMSASHNPGGPENDWGIKFNYSSGQPAPESITDKIYGNTLSISEIKMADISDVDLSRLGVTKFGSFTVEVVDPVSDYMELLESVFDFELIRTFITRPDFRFKFDAMHAITGAYAKPIFVDQLGANADSISNGIPLEDFGNGHPDPNLTYAEELVNIMYSVDAPDFGAASDGDGDRNMILGKSFFVTPSDSVAMIAANAQETIPYFKNGPKGLARSMPTSGALDLVAKKLNLPFFEVPTGWKFFGNLMDAGKLSICGEESFGTGSDHIREKDGIWAVLAWLSIIAYKNKDKKVGEKLVSVADIAKEHWATYGRNFFSRYDYEECELEGANKMVEHLRGLISNIKAGEEYGNYTIQFADDFAYTDPVDGSVVFKQGVRFVFTDGSRIIFRLSGTGSAGATIRLYVEQYEPDVSKHDMDAQTALKPLIDVALSISKLKEYTGREKPTVIT

SNPs (tot: 5)

Position	A %	C %	T %	Probability
96		66	33	0.997452
97	33	33		0.997753
2252	77		11	0.968132
2255	16		83	0.994512
2261	66	33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain