SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22326

Length: 3187 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22326
CGTCGTGACCTTGGCTGTCACTCAATTTTTGAATACAGGATAGGGGACTGCACGTCATAGTCTCCGGCTGAGCCAGGTATATATTGATCAAGGTTTCACCTTTAAGGATTCCGTTTAACCTACTCAACACTCTGGTCTTCTAAAACTCGGAGAACTTCTGAAACATATTCTGTGTCGGTCGGGCTTTCATTTATTTCGTCACGTCAATCGGTTTTTTATTTCGTCACGTCATTTGTTTTCTGAGCCTTGCAATTTTTATTTCGTCACGTCATTTGTTTTCTGAGCCTTGAGAACCCTGTCCGGGTCAAAGAATAAAGATCACTGAACTAAATTCGCACGGAGAATTTCTGATCACCTGGAAACCCCTGTCTGGGGCAGAAAATAAAGACCAGTTAACTGAGTTCGCAACGCCTCTGGTGAACTTTACTTTTATAGCTGCAGCGGTGTTGTTGGTGATCAGGGCGTTCTACGGAAACGCTGGTTTAAAACCCAAGCTAACAAGATGTTTAAAGGCTTACCGAGATTGCCTAAGTTTGCGGTTCCGCGGCGTTATGATCTGGAGCTTAGGCCTGATTTGAATGCCTGTAAATTTGATGGCAAATTGGGCGTTACGTTGAATGTCATCCAAGATACTAAGTATCTCGTTCTCAATGCTGCGGATTTGGTGATTGCAAACAACTCCGTCCATTTGCGGAGCTCTGCCTCGTCGAAGGTGATAAATCCGTCCAATGTCAGTATTGATGCAGAAGATGAGATTTTGGTGTTGGAGTTCGATGAAACCTTGCCACATGATGAGACAATTCTGGACATTGAATTTCAGGGTACTCTGAATGATCAGATGAAGGGATTTTATCGAAGTGCATATGTGATCAATGGTGAGAAAAGGAATATGGCAGTTACTCAGTTTGAACCAGCAGATGCTCGAAGGTGTTTTCCTTGCTGGGATGAACCTTCTTACAAGGCAACATTTAAAATAACGATTCAAGCACCTTTTGACAGAGTAGTTTTATCAAATATGCCAGCTATTGAAGAAAAGTCTGATGGACATTTGAAAACAGTCAGTTTCCAGGAATCACCTGTTATGTCAACATATTTGGTGGCAGTTGTTGTGGGAGAATTTGAATATATAGAACAAACAACTACAGCAGGGAATAAAGTTCGTGTGTATTGTGAGGTTGGTAAAACCAACCAAGGGATGTTTGCTCTTGATGTTGCAGTAAGAACACTTCCATATTATGCCAAATATTTTGGGACTCCTTACCCCCTGCCAAAGCTGGATATGGTTGCTATACCTGATTTTTCTGCTGGGGCAATGGAGAACTATGGTCTGGTTACATATCGGGAAACTGCTTTGCTATATGATGAGAAGCATTCTGCGGCCGCAAATAAGCAAAGGGTTGCAGTTGTTGTGGCACATGAATTAGCACATCAGTGGTTTGGAAATTTGGTTACGATGGAATGGTGGACTCACCTATGGCTGAATGAGGGGTTTGCGACTTGGGTTAGCTATTTGGCAGTGGATTACCTATTTCCTGAGTGGAAAATATGGACTCAATTTATTGATGAAACAGTGGAGGCTTATAGGTTGGATGGGCTAGTTGAGTCACATCCTATTGAGGTGGAGGTGGGTCATGCCCGTGAAATTGATGAGATTTTTGATGCTATAAGCTACAGAAAGGGAGCATCTATTATCCGTATGCTCGAAAGCTACATTGGAGCTTCTGTTTTCCAGAAAGGTCTCACTGCTTACGTGAAAAGATATGCTTGGAAAAATGCAAGGACTGAAGATTTATGGGCTGTCCTTTCAGAAGTTTCAGGAGAGTCTGTGAATGAACTAATGGACTCCTGGACAAAGCAAAAGGGATATCCAGTGGTTTCTGCTAAGCTCAAGGGGGACAAATTGGAGTTAGACCAGACCCAGTATTTGTCAAGTGGAAAACCTGGGAATGGGCATTGGGTTATCCCTATCACATTATGCTATGGTTCATACAATGCCCGTAAAAATGCACTTTTACGTGAAAAACTTGGAAGCATCAGCCTGTCAGGGATAGCGGATTCCCAAGAGGATGCAGGTTCCCAACCAAGCTGGGTGAAACTAAATGTTGGACAGACTGCTTTTTATCGTGTACAATATGATGATGAGCTTGCAAAAAGACTAAGGTCTGCGATAGGAGCAGGATCTTTGGATGCTACAGATAGGTTTGGCATTTTGGATGACACATATGCATTATGCTCTGCCTGCAAGCAGCCATTATCAGCTTTACTTTCTCTGATGGATGCATACAGAAACGAGCTTGACTATTCCGTGTTATCGTGCTTAATTGATATCGCTTATAAAGTTTCTAGTGTGGTTGGTGATGCTATCCCTCAGTCAGCTGCTGATTTTAAATTGTTCACTATCAATCTTCTTCAGTTTGCAGCTGAGAAACTGGGCTGGGAGCCTATTCCAGGTGAGAGTCACTTGAACGCAATGTTAAGAGGGCAGATATTGGTAGTCTTAGCTGAGTTTGGGCACGAAGAAACTAAAGTAGAAGCGAGAAGACGATTCAATATTTTCTTGAATGACAGAAGTACAACAATTCTACCTGCAGACATCAGAAAGGCTGCATACATAGCTGTCATGCAGAATGTCACAACCTCAGATAAATCTGGCTATGAATCTCTGTTGAGAATTTTCAGGGAGACAGATCTAAGTCAAGAAAAAGTTCGCATTTTAGGTTCAATTGCATCATCTCCAGATCCTTCTGTTGTCCGTGAAGCGCTAGACTTCAGTTTGTCTTCTGAGGTGCGGAGCCAAGATGCGGTCTTTGTACTTTATGGAATTAACAAAGAGGGACGTGAGACTGCCTGGCTGTGGTTAAAGGAAAAGTGGGACTTTATCTGGAAAAATTGGGGTTCAGGATTTTTGGTAACTCGTTTCATCAATTCTATTGTATCTACGTTTTCAAGTGAGGAAAAGGCAGATGAAATAAAGGAATTCTTTTCAACCCGAATGCAACCATCGATTGAACGCACAGTTAATCAGAGCATTGAACGAGTTCGGATCAAGGCCCAATGGGTGAAGCATGTTCAGCAGCAGGACGGCTTAGTGGAACTACTGCAGGAACTAGCTGTCTGAAAGTATCTAGCTTACCACTTCAATGCTATGACTGGTTTACGTCATGATTTTCATCGCAATTTCCTTGGT

Ace file of the UniGene sp_v1.1_unigene22326

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	APM1; APM1 (AMINOPEPTIDASE M1); aminopeptidase; K08776 puromycin-sensitive aminopeptidase [EC:3.4.11.-]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aminopeptidases.	EC:3.4.11.-	-	0.0	78%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on peptide bonds (peptide hydrolases), Aminopeptidases.	EC:3.4.11.-	-	0.0	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	aminopeptidase activity	GO:0004177	Molecular Function	0.0	78%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRB1

Fln msg:

Fln protein: MFKGLPRLPKFAVPRRYDLELRPDLNACKFDGKLGVTLNVIQDTKYLVLNAADLVIANNSVHLRSSASSKVINPSNVSIDAEDEILVLEFDETLPHDETILDIEFQGTLNDQMKGFYRSAYVINGEKRNMAVTQFEPADARRCFPCWDEPSYKATFKITIQAPFDRVVLSNMPAIEEKSDGHLKTVSFQESPVMSTYLVAVVVGEFEYIEQTTTAGNKVRVYCEVGKTNQGMFALDVAVRTLPYYAKYFGTPYPLPKLDMVAIPDFSAGAMENYGLVTYRETALLYDEKHSAAANKQRVAVVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAVDYLFPEWKIWTQFIDETVEAYRLDGLVESHPIEVEVGHAREIDEIFDAISYRKGASIIRMLESYIGASVFQKGLTAYVKRYAWKNARTEDLWAVLSEVSGESVNELMDSWTKQKGYPVVSAKLKGDKLELDQTQYLSSGKPGNGHWVIPITLCYGSYNARKNALLREKLGSISLSGIADSQEDAGSQPSWVKLNVGQTAFYRVQYDDELAKRLRSAIGAGSLDATDRFGILDDTYALCSACKQPLSALLSLMDAYRNELDYSVLSCLIDIAYKVSSVVGDAIPQSAADFKLFTINLLQFAAEKLGWEPIPGESHLNAMLRGQILVVLAEFGHEETKVEARRRFNIFLNDRSTTILPADIRKAAYIAVMQNVTTSDKSGYESLLRIFRETDLSQEKVRILGSIASSPDPSVVREALDFSLSSEVRSQDAVFVLYGINKEGRETAWLWLKEKWDFIWKNWGSGFLVTRFINSIVSTFSSEEKADEIKEFFSTRMQPSIERTVNQSIERVRIKAQWVKHVQQQDGLVELLQELAV*

Protein Length: 873

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTGAATACAGGATAGGGGACTGCACGTCATAGTCTCCGGCTGAGCCAGGTATATATTGATCAAGGTTTCACCTTTAAGGATTCCGTTTAACCTACTCAACACTCTGGTCTTCTAAAACTCGGAGAACTTCTGAAACATATTCTGTGTCGGTCGGGCTTTCATTTATTTCGTCACGTCAATCGGTTTTTTATTTCGTCACGTCATTTGTTTTCTGAGCCTTGCAATTTTTATTTCGTCACGTCATTTGTTTTCTGAGCCTTGAGAACCCTGTCCGGGTCAAAGAATAAAGATCACTGAACTAAATTCGCACGGAGAATTTCTGATCACCTGGAAACCCCTGTCTGGGGCAGAAAATAAAGACCAGTTAACTGAGTTCGCAACGCCTCTGGTGAACTTTACTTTTATAGCTGCAGCGGTGTTGTTGGTGATCAGGGCGTTCTACGGAAACGCTGGTTTAAAACCCAAGCTAACAAG_-_ATGTTTAAAGGCTTACCGAGATTGCCTAAGTTTGCGGTTCCGCGGCGTTATGATCTGGAGCTTAGGCCTGATTTGAATGCCTGTAAATTTGATGGCAAATTGGGCGTTACGTTGAATGTCATCCAAGATACTAAGTATCTCGTTCTCAATGCTGCGGATTTGGTGATTGCAAACAACTCCGTCCATTTGCGGAGCTCTGCCTCGTCGAAGGTGATAAATCCGTCCAATGTCAGTATTGATGCAGAAGATGAGATTTTGGTGTTGGAGTTCGATGAAACCTTGCCACATGATGAGACAATTCTGGACATTGAATTTCAGGGTACTCTGAATGATCAGATGAAGGGATTTTATCGAAGTGCATATGTGATCAATGGTGAGAAAAGGAATATGGCAGTTACTCAGTTTGAACCAGCAGATGCTCGAAGGTGTTTTCCTTGCTGGGATGAACCTTCTTACAAGGCAACATTTAAAATAACGATTCAAGCACCTTTTGACAGAGTAGTTTTATCAAATATGCCAGCTATTGAAGAAAAGTCTGATGGACATTTGAAAACAGTCAGTTTCCAGGAATCACCTGTTATGTCAACATATTTGGTGGCAGTTGTTGTGGGAGAATTTGAATATATAGAACAAACAACTACAGCAGGGAATAAAGTTCGTGTGTATTGTGAGGTTGGTAAAACCAACCAAGGGATGTTTGCTCTTGATGTTGCAGTAAGAACACTTCCATATTATGCCAAATATTTTGGGACTCCTTACCCCCTGCCAAAGCTGGATATGGTTGCTATACCTGATTTTTCTGCTGGGGCAATGGAGAACTATGGTCTGGTTACATATCGGGAAACTGCTTTGCTATATGATGAGAAGCATTCTGCGGCCGCAAATAAGCAAAGGGTTGCAGTTGTTGTGGCACATGAATTAGCACATCAGTGGTTTGGAAATTTGGTTACGATGGAATGGTGGACTCACCTATGGCTGAATGAGGGGTTTGCGACTTGGGTTAGCTATTTGGCAGTGGATTACCTATTTCCTGAGTGGAAAATATGGACTCAATTTATTGATGAAACAGTGGAGGCTTATAGGTTGGATGGGCTAGTTGAGTCACATCCTATTGAGGTGGAGGTGGGTCATGCCCGTGAAATTGATGAGATTTTTGATGCTATAAGCTACAGAAAGGGAGCATCTATTATCCGTATGCTCGAAAGCTACATTGGAGCTTCTGTTTTCCAGAAAGGTCTCACTGCTTACGTGAAAAGATATGCTTGGAAAAATGCAAGGACTGAAGATTTATGGGCTGTCCTTTCAGAAGTTTCAGGAGAGTCTGTGAATGAACTAATGGACTCCTGGACAAAGCAAAAGGGATATCCAGTGGTTTCTGCTAAGCTCAAGGGGGACAAATTGGAGTTAGACCAGACCCAGTATTTGTCAAGTGGAAAACCTGGGAATGGGCATTGGGTTATCCCTATCACATTATGCTATGGTTCATACAATGCCCGTAAAAATGCACTTTTACGTGAAAAACTTGGAAGCATCAGCCTGTCAGGGATAGCGGATTCCCAAGAGGATGCAGGTTCCCAACCAAGCTGGGTGAAACTAAATGTTGGACAGACTGCTTTTTATCGTGTACAATATGATGATGAGCTTGCAAAAAGACTAAGGTCTGCGATAGGAGCAGGATCTTTGGATGCTACAGATAGGTTTGGCATTTTGGATGACACATATGCATTATGCTCTGCCTGCAAGCAGCCATTATCAGCTTTACTTTCTCTGATGGATGCATACAGAAACGAGCTTGACTATTCCGTGTTATCGTGCTTAATTGATATCGCTTATAAAGTTTCTAGTGTGGTTGGTGATGCTATCCCTCAGTCAGCTGCTGATTTTAAATTGTTCACTATCAATCTTCTTCAGTTTGCAGCTGAGAAACTGGGCTGGGAGCCTATTCCAGGTGAGAGTCACTTGAACGCAATGTTAAGAGGGCAGATATTGGTAGTCTTAGCTGAGTTTGGGCACGAAGAAACTAAAGTAGAAGCGAGAAGACGATTCAATATTTTCTTGAATGACAGAAGTACAACAATTCTACCTGCAGACATCAGAAAGGCTGCATACATAGCTGTCATGCAGAATGTCACAACCTCAGATAAATCTGGCTATGAATCTCTGTTGAGAATTTTCAGGGAGACAGATCTAAGTCAAGAAAAAGTTCGCATTTTAGGTTCAATTGCATCATCTCCAGATCCTTCTGTTGTCCGTGAAGCGCTAGACTTCAGTTTGTCTTCTGAGGTGCGGAGCCAAGATGCGGTCTTTGTACTTTATGGAATTAACAAAGAGGGACGTGAGACTGCCTGGCTGTGGTTAAAGGAAAAGTGGGACTTTATCTGGAAAAATTGGGGTTCAGGATTTTTGGTAACTCGTTTCATCAATTCTATTGTATCTACGTTTTCAAGTGAGGAAAAGGCAGATGAAATAAAGGAATTCTTTTCAACCCGAATGCAACCATCGATTGAACGCACAGTTAATCAGAGCATTGAACGAGTTCGGATCAAGGCCCAATGGGTGAAGCATGTTCAGCAGCAGGACGGCTTAGTGGAACTACTGCAGGAACTAGCTGTCTGA___AAGTATCTAGCTTACCACTTCAATGCTATGACTGGTTTACGTCATGATTTTCATCGCAATTTCCTTGGT

Fln Alignment:

sp_v1.1_unigene22326___MFKGLPRLPKFAVPRRYDLELRPDLNACKFDGKLGVTLNVIQDTKYLVLNAADLVIANNSVHLRSSASSKVINPSNVSIDAEDEILVLEFDETLPHDETILDIEFQGTLNDQMKGFYRSAYVINGEKRNMAVTQFEPADARRCFPCWDEPSYKATFKITIQAPFDRVVLSNMPAIEEKSDGHLKTVSFQESPVMSTYLVAVVVGEFEYIEQTTTAGNKVRVYCEVGKTNQGMFALDVAVRTLPYYAKYFGTPYPLPKLDMVAIPDFSAGAMENYGLVTYRETALLYDEKHSAAANKQRVAVVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAVDYLFPEWKIWTQFIDETVEAYRLDGLVESHPIEVEVGHAREIDEIFDAISYRKGASIIRMLESYIGASVFQKGLTAYVKRYAWKNARTEDLWAVLSEVSGESVNELMDSWTKQKGYPVVSAKLKGDKLELDQTQYLSSGKPGNGHWVIPITLCYGSYNARKNALLREKLGSISLSGIADSQEDAGSQPSWVKLNVGQTAFYRVQYDDELAKRLRSAIGAGSLDATDRFGILDDTYALCSACKQPLSALLSLMDAYRNELDYSVLSCLIDIAYKVSSVVGDAIPQSAADFKLFTINLLQFAAEKLGWEPIPGESHLNAMLRGQILVVLAEFGHEETKVEARRRFNIFLNDRSTTILPADIRKAAYIAVMQNVTTSDKSGYESLLRIFRETDLSQEKVRILGSIASSPDPSVVREALDFSLSSEVRSQDAVFVLYGINKEGRETAWLWLKEKWDFIWKNWGSGFLVTRFINSIVSTFSSEEKADEIKEFFSTRMQPSIERTVNQSIERVRIKAQWVKHVQQQDGLVELLQELA
B8LRB1_______________MFKGLPRLPKFAVPRRYDLELRPDLNACKFDGKLAVTLDVLQDTKYLVLNAADLVIANSSVCLRSTASSKVVNPSNVSVDAEDEILVLEFEETLPQEETILDIEFQGTLNDQMKGFYRSAYVINGEKRNMAVTQFEPADARRCFPCWDEPSYKATFKITVQAPVDRVVLSNMPAIEEKSDGHLRTVSFQESPIMSTYLVAIVVGELEFIEQTTTAGNKVRVYCEVGKTKQGMFALDVAVRTLPYYAEYFGTPYPLPKLDMVAIPDFSAGAMENYGLVTYRETALLYDEQHSAAANKQRVAIVVTHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADYLFPEWKIWTQFMDQTVDAFRLDGLVGSHPIEVEVGHAREIDEIFDAISYEKGASIIRMLESYIGASVFQKGLNAYVKRYAWKNARTEDLWAVLSEESEESVNELMDSWTKQKGYPVVFAKLKGDKLELEQSQYLSSGKLGHGHWVIPVTLCYGSYSARKNALLREKLGSVSLPGIADSQKDVGSQPSWIKINVGQTAFYRVQYDDELAKRLRSAIEAGFLDATDRFGILDDTYALCSACKQPLSALLSLMDVYRQELDYSVLSCLIDIAYKVSSVVSDAIPQSAADFKSFTINLLQFAAEKLGWDPIPGESHLNAMLRGQILEVLAQFGHEETKVEARRRFNSFLNDRSTTLLPADIRKAAYIAVMQNVTSSDKSGYESLLRIFRETDLSQEKVRILGSIALSPDSSVVREALDFSLSSEVRNQDALFVLRGISKEGRETAWLWLKEKWEFILKKLGTGSLITRFITSVASPFSSEKKADEIEEFFSTRMQPSIERTVNQTIEQVQIRAQWVKHMQQQDGLVELLRELA

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
35	66	33			0.997452
36			33	66	0.997452
37	66			33	0.997452
39	66		33		0.997452
40			66	33	0.997452
43		33		66	0.997452
44	66	33			0.997452
45			66	33	0.997452
46			66	33	0.997452
403			33	66	1.0
404			33	66	1.0
405	33	66			1.0
408			33	66	1.0
409	33	66			1.0
410		33	66		1.0
412	33			66	1.0
413	33			66	1.0
414		33	66		1.0
417		33		66	1.0
420	33			66	1.0
421		33	66		1.0
422			33	66	1.0
423		33		66	1.0
552	33		66		0.997452
600		15		84	0.999986
611		15	84		0.999986
615		15		84	0.999986
726	18			72	0.999994
728		90		10	0.90298
729	10		90		0.90298
732		88		11	0.923564
736			88	11	0.923564
737	11			88	0.923564
738	11	88			0.923564
741		11		88	0.923564
742	88			11	0.923564
746	88			11	0.923564
747		11		88	0.923564
749		88		11	0.923564
838	20		80		0.995493
915	66		33		0.997452
1896	20		70		0.999998
2058	75		25		0.996473
2138	83		16		0.994512
2139			16	83	0.994512
3087		3		96	0.987242

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain