SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22319

Length: 682 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22319

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	replication factor A 1, rfa1, putative; K07466 replication factor A1	-	-	2.0e-30	59%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	63%
Blast2go	replication factor a	-	-	1.34269e-37	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	male meiosis I	GO:0007141	Biological Process	1.34269e-37	73%
Blast2go	chiasma assembly	GO:0051026	Biological Process	1.34269e-37	73%
Blast2go	male gamete generation	GO:0048232	Biological Process	1.34269e-37	73%
Blast2go	pollen development	GO:0009555	Biological Process	1.34269e-37	73%
Blast2go	reciprocal meiotic recombination	GO:0007131	Biological Process	1.34269e-37	73%
Blast2go	nuclear chromatin	GO:0000790	Cellular Component	1.34269e-37	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Replication factor-A protein 1, N-terminal	IPR007199	-	1.34269e-37	73%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	1.34269e-37	73%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	1.34269e-37	73%

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
95	50	50			1.0
97	50			50	1.0
98	50	50			1.0
102	50		50		1.0
103		50		50	1.0
106	50			50	1.0
108	50		50		1.0
113	50			50	1.0
118	50			50	1.0
120	50	50			1.0
232	20			80	0.995493
307		83	16		0.994512
315		16	83		0.994512
316		16	83		0.994512
319			16	83	0.994512
320		16		83	0.994512
321			83	16	0.994512
323	83			16	0.994512
329	85		14		0.993533
330			85	14	0.993533
332	14	85			0.993533
333	85	14			0.993533
334		14	85		0.993533
335	85			14	0.993533
337		85	14		0.993533
341	85		14		0.993533
342		85		14	0.993533
343		14		85	0.993533
406		85		14	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
596	613	CAG CAG CAG CAG CAG CAG	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain