SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22304

Length: 945 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22304

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR/P-loop/LRR n=1 Tax=Pinus taeda RepID=Q8L8J0_PINTA	-	-	7.0e-16	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	tir-nbs-lrr protein	-	-	5.07381e-22	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9Z7

Fln msg: Separated hits, possible frame ERROR between 514 and 586, your sequence is longer than subject: 216 - 117

Fln protein: MNKLKFLRVSGQKLETLWQPESQLPLCLEELDVNGCVKLKNIWGLEHLTKLQRLDVSWCSQLEELSAKGCTQLKRIxxxxxxxxxxxxxxxxxxxxxxxxxMELLTSLWYLSAEGCTQLKRIRGLEQATKLIVLNVAGCFQLDELPSMELLTSLMFLRANGCWKLKNIRGLCTELRLLHLYGCCELEEVECVEHCTRLEEFDAGGCPKLQCPVWE*

Protein Length: 217

Fln nts: ATGGGGAAGCCAGTGTTAAGCAACCATTTAGGTTTTTGCATTTTGATGACTTGGTGAAGCAATCAACTGGAATAATAACCGTGCGGGGAATTAGAATGGTTCTTAGCGAATGCCATGATGATGATGATGATGATTTTGATTCTATTCAAATGAAGAAGTTACACCTTGTTGATACTGAAGGTTCCCTCTTGGGCGCATTCTGAAGAGCGCCAAGTCGCCAAATCTCATATGGCTCCGCTGGAACAAGTGTCCATACTCATCTCTCCCTCGTGATCTGATTCCA_-_ATGAATAAGCTAAAGTTTCTTCGGGTGTCCGGGCAGAAATTAGAAACATTGTGGCAACCAGAATCACAGCTCCCTTTATGTTTGGAGGAGTTGGACGTAAATGGATGTGTAAAGTTGAAGAACATATGGGGGTTGGAACACCTGACAAAACTTCAGCGGTTAGATGTCAGTTGGTGCTCTCAGTTAGAGGAATTGTCGGCAAAGGGATGTACGCAGCTGAAGAGGATACGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTATGGAATTGTTGACATCTTTGTGGTATTTGTCGGCAGAGGGATGTACGCAGCTGAAGAGGATACGGGGTTTGGAGCAGGCCACAAAACTTATAGTGTTAAATGTTGCTGGGTGCTTTCAGTTAGATGAGCTGCCTAGCATGGAATTATTGACATCTTTGATGTTCTTGAGGGCAAATGGATGTTGGAAGCTGAAGAACATACGGGGCTTGTGTACAGAGCTTCGACTCCTACATCTCTATGGGTGCTGTGAGTTAGAGGAGGTGGAATGTGTTGAACATTGTACGAGGTTGGAGGAGTTTGATGCCGGTGGGTGCCCCAAATTACAATGTCCAGTCTGGGAGTAG___GCCGACGCTGGCCAT

Fln Alignment:

sp_v1.1_unigene22304___RDLIPMNKLKFLRVSG-QKLETLWQPESQLPLCLEELDVNGCVKLKNIWGLEHLTKLQRLDVSWCSQLEEL-SAKGCTQLKRIRVWSRPQNLSCxxxxxxxxxxxxxxxxxxxxxxxxMELLTSLWYLSAEGCTQLKRIRGLEQATKLIVLNVAGCFQLDELPSMELLTSLMFLRANGCWKLKNIRGL--CTELRLLHLYGXXXXXXXXXXXXXTRLEEF-DAGGCPKLQCPVWE
D5A9Z7_______________RGLEQATKLQRLDVGGCSELDEL--PSMETLVSLECLWAEGCVKLKCIRGLEQCRQLRTLSVTGCSELEEVEGVEHCTWLEKLADYDGCHKLQCxxxxxxxxxxxxxxxxxxxxxxxxMETLVSLEDLYAEGCVKLKCIRGLEQATKLQRLDVGGCSELDELPSMETLVSLECLWAEGCVKLKCIRGLEQCRQLRTLSVTGCSELEEVEGVEHCTWLEKLADYDGCHKLQCPVWE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
753	33			66	0.997452
756	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
115	134	ATG ATG ATG ATG ATG ATG AT	20

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain