SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22300

Length: 2540 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22300
CGTCGTGACCTTGGCGTCGTGACCTTGGCTGTCACTCAGGACTGTAGTGGAGACCCGGTGGCTAGTAAAGTAGCAGCTTTGGCTTTGAAATGTGCGAAGACGAAGTCCAGTGTTGGATCATGGGCATCTATAATTAGCCGCGTGATTCGAACTCCCGACGTGTTGGGAAGTTTCTTGTCTCGTTAGTCCCCTTCCAGTGGCTACTTAATTAGCAGAAGAGATGGTGCTGGGGAATGGCAGAAGCTCTGCAGGCCAGTACTGTGGTAGTCTGATGTGATGACTGCCGGTTATCACCTGTTGCGTAAGAGAATGGACAAACACACAGGCAAGTCCCGCTACAAATTCTTTTATATGGTATTGGTGTGCTGTGCTGTATGGTGCGTGATATTTTATTTCCCGTTCTTTGCGTTCGAGACTAGTTCGCAGTATAGATCTGAGGGGATTCCTGGCCATGAAAGGGAAAATCAGAATCTTTGGCCACCGAAACCCCTGGCGGAGAAACCCCAAGCACCGAAACCCTTCCTGAAGGCCCTGAAAACCGCAGAAAACAGCAGTGATCCATGCGGTGGGAGGTATATTTATGTGCACGATCTGCCCGCGAAGTTTAATGAAGACATGCTCAAGGAATGCCGGCGGCTGAGCCTGTGGACGAACATGTGTAAATTCACGTCAAATGCCGGGCTTGGCCCTACCCTGGAGAATACCGAGGGGGTTTTCTCGAATACTGGGTGGTTTGCGACGAATCAATTCGCTGTGGATGTGATTTTCCGCAACAGGATGAAGCAGTACGAGTGCCTGACGAATGATTCGTCAATGGCCGCGGCTGTGTTTGTCCCCTTTTATGCGGGTCTTGATATCTCAAGACATCTGTGGGGTTATAATATATCTGTTAGAGATGCTGCGTCGTTGCAACTCATGGATTGGTTGGTTAGCAGGCCGGAATGGGAGATCAATAAAGGGCATGACCATTTTCTTGTTGGGGGAAGAATAACTTGGGATTTCAGGAGGCTTTCTGATTCCGAGAGTGATTGGGGCAGCAAGCTTCTGTTTTTGCCTGCTATGAAAAACATGACCATGCTAGTCGTTGAGGCCAGTCCGTGGAATCGGAACGACATGGCAATCCCTTATCCCACATACTTCCATCCTGCCAAGGATTCTGATATCATCGAATGGCAGAACAGAATGCGGGGCATGAATCGTTCATCGCTGTTTTCCTTTGCTGGGGCCCCTCGCCCCGACATACCAACATCGATCAGGGGGCAGATCATGGATCAGTGCAGAAAATCTAATGTAGGTAAGCTCTTGGAATGTGATCTTGGTGAGAGCAAATGTCACTCACCGAGTACTATTATGAAGATGTTCCAGGAGTCTGTGTTCTGCTTGCAGCCCCAGGGTGATTCCTATACGCGCAGATCCTTTTTCGACTCCATGTTGGCTGGTTGTATTCCGGTCATGTTCCATCCTGGTTCTGCATATGCCCAGTATATCTGGCATCTTCCCAAGAATTATTCAACTTATTCGGTGTTTATTCCTGAGGACGACATCCGGAAGAGAAATATTAGCATAGAGCAGAGACTGCTTCAGATCCATCCCGAACAGGTGAGAAGGATGAGGGATGTGATAAAGCTCATTCCAGCTATAGTGTATGCTGATCCCCGCTCTAAGCTAAACAATTTCAAGGATGCATTTGATATTGCTGTTCAATCCATGATTGATAAAGTTACCAAACTTAGATTGGATATTATAGAAGGCCGAGAAATAGAAGATTATCAAGAAGATGAAGGATCTGAACAATCTGCAAGGAAGTGGGAAGGATTGCGCAGAGAAGGGGAACAAACATGGGATGAGTTTTTCTCTAAGCCAAAGGATGAGGCATCTGGGCAACCTGAATCAAATAGTGCTAAACAGGAATCTCCAGGAATTAATCAAGATCAGCATCAGGCAGAGGAGAAAGCATGAAGTAAGCCAGCGGCAGAAGGTCTATACAATCGGTGGGAAGGGTCCAATATATTTTTGAAGATTAAGTTTACATGATTTTTTGGTAGCAGCTGGAACTGGAACTAATCCTCTGACCAAGGCCTTGGACAATTTTCAAACATTTGCATTCCTGAGTAGTAGTTAGATGGTTCGAGAATTGTACATTCTTAACATTGGCGGATTGCACCCTTCATGATTGCCTGGAGGTTATTGCAGTTGGTTCAGTGGGTACCTGGGTAAGGACTTGGCTGTCATAACATGGGCCATTGTCCTGCTGATTATTTTTTAATTGTATCATTGTGCATATTGCAATTCAATAATGTTTCATCCTATCGAGGCACTTAATTATCCACAATAATGGAGATTAGGAATTGTTATCATGATGCTGGTATCATTTTCAGACTGGTAGATTGTTTTAATGTAAGCTGCCAGGAGTTTTATAGGGCTCAGGAACACTGATAAACCTTTTTGTAAGTGATCGGCCAAGTGTTGAGGTTGATCCTTTATCAATTACTCCTTATTTATTAAAAAATGGGCAATTGAAGTTTCATTGTAGTTTTTTT

Ace file of the UniGene sp_v1.1_unigene22300

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase, CAZy family GT47 n=1 Tax=Populus trichocarpa RepID=B9GRC8_POPTR	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	xyloglucan galactosyltransferase	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	endomembrane system organization	GO:0010256	Biological Process	77%
Blast2go	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	77%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	77%
Blast2go	xyloglucan biosynthetic process	GO:0009969	Biological Process	77%
Blast2go	fucose biosynthetic process	GO:0042353	Biological Process	77%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	77%
Blast2go	integral to Golgi membrane	GO:0030173	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exostosin-like	IPR004263	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT31

Fln msg: W2: There is no M at the beginning, your sequence is longer than subject: 653 - 155

Fln protein: RRDLGVVTLAVTQDCSGDPVASKVAALALKCAKTKSSVGSWASIISRVIRTPDVLGSFLSR*SPSSGYLISRRDGAGEWQKLCRPVLW*SDVMTAGYHLLRKRMDKHTGKSRYKFFYMVLVCCAVWCVIFYFPFFAFETSSQYRSEGIPGHERENQNLWPPKPLAEKPQAPKPFLKALKTAENSSDPCGGRYIYVHDLPAKFNEDMLKECRRLSLWTNMCKFTSNAGLGPTLENTEGVFSNTGWFATNQFAVDVIFRNRMKQYECLTNDSSMAAAVFVPFYAGLDISRHLWGYNISVRDAASLQLMDWLVSRPEWEINKGHDHFLVGGRITWDFRRLSDSESDWGSKLLFLPAMKNMTMLVVEASPWNRNDMAIPYPTYFHPAKDSDIIEWQNRMRGMNRSSLFSFAGAPRPDIPTSIRGQIMDQCRKSNVGKLLECDLGESKCHSPSTIMKMFQESVFCLQPQGDSYTRRSFFDSMLAGCIPVMFHPGSAYAQYIWHLPKNYSTYSVFIPEDDIRKRNISIEQRLLQIHPEQVRRMRDVIKLIPAIVYADPRSKLNNFKDAFDIAVQSMIDKVTKLRLDIIEGREIEDYQEDEGSEQSARKWEGLRREGEQTWDEFFSKPKDEASGQPESNSAKQESPGINQDQHQAEEKA*

Protein Length: 654

Fln nts: CGTCGTGACCTTGGCGTCGTGACCTTGGCTGTCACTCAGGACTGTAGTGGAGACCCGGTGGCTAGTAAAGTAGCAGCTTTGGCTTTGAAATGTGCGAAGACGAAGTCCAGTGTTGGATCATGGGCATCTATAATTAGCCGCGTGATTCGAACTCCCGACGTGTTGGGAAGTTTCTTGTCTCGTTAGTCCCCTTCCAGTGGCTACTTAATTAGCAGAAGAGATGGTGCTGGGGAATGGCAGAAGCTCTGCAGGCCAGTACTGTGGTAGTCTGATGTGATGACTGCCGGTTATCACCTGTTGCGTAAGAGAATGGACAAACACACAGGCAAGTCCCGCTACAAATTCTTTTATATGGTATTGGTGTGCTGTGCTGTATGGTGCGTGATATTTTATTTCCCGTTCTTTGCGTTCGAGACTAGTTCGCAGTATAGATCTGAGGGGATTCCTGGCCATGAAAGGGAAAATCAGAATCTTTGGCCACCGAAACCCCTGGCGGAGAAACCCCAAGCACCGAAACCCTTCCTGAAGGCCCTGAAAACCGCAGAAAACAGCAGTGATCCATGCGGTGGGAGGTATATTTATGTGCACGATCTGCCCGCGAAGTTTAATGAAGACATGCTCAAGGAATGCCGGCGGCTGAGCCTGTGGACGAACATGTGTAAATTCACGTCAAATGCCGGGCTTGGCCCTACCCTGGAGAATACCGAGGGGGTTTTCTCGAATACTGGGTGGTTTGCGACGAATCAATTCGCTGTGGATGTGATTTTCCGCAACAGGATGAAGCAGTACGAGTGCCTGACGAATGATTCGTCAATGGCCGCGGCTGTGTTTGTCCCCTTTTATGCGGGTCTTGATATCTCAAGACATCTGTGGGGTTATAATATATCTGTTAGAGATGCTGCGTCGTTGCAACTCATGGATTGGTTGGTTAGCAGGCCGGAATGGGAGATCAATAAAGGGCATGACCATTTTCTTGTTGGGGGAAGAATAACTTGGGATTTCAGGAGGCTTTCTGATTCCGAGAGTGATTGGGGCAGCAAGCTTCTGTTTTTGCCTGCTATGAAAAACATGACCATGCTAGTCGTTGAGGCCAGTCCGTGGAATCGGAACGACATGGCAATCCCTTATCCCACATACTTCCATCCTGCCAAGGATTCTGATATCATCGAATGGCAGAACAGAATGCGGGGCATGAATCGTTCATCGCTGTTTTCCTTTGCTGGGGCCCCTCGCCCCGACATACCAACATCGATCAGGGGGCAGATCATGGATCAGTGCAGAAAATCTAATGTAGGTAAGCTCTTGGAATGTGATCTTGGTGAGAGCAAATGTCACTCACCGAGTACTATTATGAAGATGTTCCAGGAGTCTGTGTTCTGCTTGCAGCCCCAGGGTGATTCCTATACGCGCAGATCCTTTTTCGACTCCATGTTGGCTGGTTGTATTCCGGTCATGTTCCATCCTGGTTCTGCATATGCCCAGTATATCTGGCATCTTCCCAAGAATTATTCAACTTATTCGGTGTTTATTCCTGAGGACGACATCCGGAAGAGAAATATTAGCATAGAGCAGAGACTGCTTCAGATCCATCCCGAACAGGTGAGAAGGATGAGGGATGTGATAAAGCTCATTCCAGCTATAGTGTATGCTGATCCCCGCTCTAAGCTAAACAATTTCAAGGATGCATTTGATATTGCTGTTCAATCCATGATTGATAAAGTTACCAAACTTAGATTGGATATTATAGAAGGCCGAGAAATAGAAGATTATCAAGAAGATGAAGGATCTGAACAATCTGCAAGGAAGTGGGAAGGATTGCGCAGAGAAGGGGAACAAACATGGGATGAGTTTTTCTCTAAGCCAAAGGATGAGGCATCTGGGCAACCTGAATCAAATAGTGCTAAACAGGAATCTCCAGGAATTAATCAAGATCAGCATCAGGCAGAGGAGAAAGCATGA___AGTAAGCCAGCGGCAGAAGGTCTATACAATCGGTGGGAAGGGTCCAATATATTTTTGAAGATTAAGTTTACATGATTTTTTGGTAGCAGCTGGAACTGGAACTAATCCTCTGACCAAGGCCTTGGACAATTTTCAAACATTTGCATTCCTGAGTAGTAGTTAGATGGTTCGAGAATTGTACATTCTTAACATTGGCGGATTGCACCCTTCATGATTGCCTGGAGGTTATTGCAGTTGGTTCAGTGGGTACCTGGGTAAGGACTTGGCTGTCATAACATGGGCCATTGTCCTGCTGATTATTTTTTAATTGTATCATTGTGCATATTGCAATTCAATAATGTTTCATCCTATCGAGGCACTTAATTATCCACAATAATGGAGATTAGGAATTGTTATCATGATGCTGGTATCATTTTCAGACTGGTAGATTGTTTTAATGTAAGCTGCCAGGAGTTTTATAGGGCTCAGGAACACTGATAAACCTTTTTGTAAGTGATCGGCCAAGTGTTGAGGTTGATCCTTTATCAATTACTCCTTATTTATTAAAAAATGGGCAATTGAAGTTTCATTGTAGTTTTTTT

Fln Alignment:

sp_v1.1_unigene22300___KC-HSPSTIMKMFQESVFCLQPQGDSYTRRSFFDSMLAGCIPVMFHPGSAYAQYIWHLPKNYSTYSVFIPEDDI--RKRNISIEQRLLQIHPEQVRRMRD-VIKLIPAIVYADPRSKLNNF---KDAFDIAVQSMIDKVTKLR
A9NT31_______________KCSHRPEAVMTELLKANFCLQPSGDSPTRRSTFDALIAGCIPVFFRRDSAYEQYTWHLPSDPETYSVFIAEERMVNSRKALKIEDVLSSYSQEKIRKMREKIVEIMPSLLYMNFAEKDGGEIFPRDAFDLSIEGMLRKVMSSR

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
60	12		87		0.992554
64		87	12		0.992554
65			12	87	0.992554
148		12		87	0.992554
150		87		12	0.992554
153	87		12		0.992554
156		87	12		0.992554
157		87		12	0.992554
160	82	13		4	1.0
161	13	65	4		1.0
443	25		75		1.0
1244	83	16			0.999991
1247		83		16	0.999991
1248		83	16		0.999991
1249	83		16		0.999991
1250	83	16			0.999991
1251		83		16	0.999991
1252	81		18		0.999994
1255	18		81		0.999994
1256	81	18			0.999994
1339		83	16		1.0
1341		83	16		1.0
1345			77	22	1.0
1346	83			16	1.0
1349	83		16		1.0
1352	83		16		1.0
1354		16		83	1.0
1356		16		83	1.0
1357			83	16	1.0
1358	83	16			1.0
1881		90	10		0.90298
1882			10	90	0.90298
2221	41		58		1.0
2222			41	58	1.0
2530		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain