SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22269

Length: 1041 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22269

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SPINDLY n=1 Tax=Sinningia speciosa RepID=B5AY31_9LAMI	-	-	80%
FL-Next	sp=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; Petunia hybrida (Petunia).	-	-	78%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of gibberellic acid mediated signaling pathway	GO:0009938	Biological Process	86%
Blast2go	regulation of oxygen and reactive oxygen species metabolic process	GO:0080010	Biological Process	86%
Blast2go	cytokinin mediated signaling pathway	GO:0009736	Biological Process	86%
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	nucleus	GO:0005634	Cellular Component	86%
Blast2go	cytosol	GO:0005829	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Tetratricopeptide TPR-1	IPR001440	-	86%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	86%
Blast2go	Tetratricopeptide repeat-containing domain	IPR013026	-	86%
Blast2go	Tetratricopeptide repeat	IPR019734	-	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: O82039

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 675 aas, your sequence is shorter than subject: 234 - 932

Fln protein: MSSTSSTSPTSTSAPRPASSPSSSSLRRFQGKDALSYANILRSRNKFADALGLYETVLETEPTNVEAHIGKGICLQMQSAIPKAFECFAEAIALDPQNACALTHCGVLYKDEGHLLEAAEAYQKALVVDPTYKLAAEYLAIVLTDLGTSLKLAGNVHEGIQKYYEALKADSHYAPAYYNLGVVYSEMMQYDMALNCYERAALQRPMYAEAYCNMGVIYKNRGDLDAAIACYER*

Protein Length: 235

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTCAAAGTCTGTTTCGACTGTTGCTGTCCTGCTTCGGAGACCAAGTAGCCATCCGCACTCTGTCCTGCAGGGCCCGGAGGGTTGTGAAGTGGAGCAGTATGGAAAACTGGGGGCGTTGAAGAGTGGAATGGGTCCAGTTATGGCATCGTCGTGACCTTGGCTGTCACTCAGTCTCAGATTGTGAATGCTGGAAGGGAGCGGGGGGATGTTGCAAGCGATAATGAGCACTCGAAGAGGCCGTTGCCTTCGAATGCCGATGGAGCAGTGAGTCATCATTCAACGAGCCATCATTCA_-_ATGAGTAGTACTTCTAGTACCAGCCCTACTTCTACTTCTGCTCCTCGTCCTGCCTCCTCCCCTTCGTCCTCATCTCTTAGAAGGTTTCAAGGGAAGGATGCACTGTCGTATGCCAATATACTGCGATCGAGGAATAAGTTTGCGGATGCACTTGGTCTGTATGAAACTGTTCTGGAAACAGAGCCTACCAATGTCGAGGCTCACATTGGAAAAGGAATTTGTCTCCAAATGCAAAGTGCTATTCCGAAGGCATTTGAATGCTTTGCCGAAGCTATTGCGCTTGATCCTCAGAATGCTTGTGCTCTCACGCACTGTGGAGTTTTGTACAAGGATGAAGGGCACTTGCTAGAAGCAGCAGAGGCATATCAGAAGGCTCTTGTAGTGGATCCTACATACAAGCTTGCTGCGGAGTACTTGGCAATTGTCTTGACAGATCTTGGAACCAGTTTGAAACTTGCAGGAAATGTCCATGAAGGAATTCAGAAGTACTATGAAGCTCTAAAAGCAGATAGCCACTATGCTCCTGCTTATTATAATTTGGGGGTGGTTTATTCGGAAATGATGCAATATGATATGGCACTTAATTGCTATGAAAGAGCTGCATTGCAAAGGCCTATGTATGCTGAAGCATATTGCAACATGGGTGTGATATATAAGAACCGTGGAGATTTGGATGCAGCTATTGCGTGTTATGAGAGGTGAAGCTTGAAGGAGATATACA

Fln Alignment:

sp_v1.1_unigene22269___RRFQGKDALSYANILRSRNKFADALGLYETVLETEPTNVEAHIGKGICLQMQSAIPKAFECFAEAIALDPQNACALTHCGVLYKDEGHLLEAAEAYQKALVVDPTYKLAAEYLAIVLTDLGTSLKLAGNVHEGIQKYYEALKADSHYAPAYYNLGVVYSEMMQYDMALNCYERAALQRPMYAEAYCNMGVIYKNRGDLDAAIACYER
O82039_______________KSFEGKDAITYANILRSRNKFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALTHCGILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKYYEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGDLESAIACYER

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
173		75	25		0.996473
175	25			75	0.996473
177	25		75		0.996473
178			25	75	0.996473
179	25		75		0.996473
186		25	75		0.996473
187	25	75			0.996473
188	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain