SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22257

Length: 1364 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22257

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 n=77 Tax=Embryophyta RepID=VATL1_ARATH	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	vacuolar atp synthase 16 kda proteolipid subunit	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	proton-transporting two-sector ATPase complex, proton-transporting domain	GO:0033177	Cellular Component	98%
Blast2go	vacuole	GO:0005773	Cellular Component	98%
Blast2go	plasma membrane	GO:0005886	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Blast2go	ATPase, V0 complex, proteolipid subunit C	IPR000245	-	98%
Blast2go	ATPase, F0/V0 complex, subunit C	IPR002379	-	98%
Blast2go	ATPase, V0 complex, proteolipid subunit C, eukaryotic	IPR011555	-	98%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NL02

Fln msg:

Fln protein: MVDVFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLSGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD*

Protein Length: 167

Fln nts: ATGGGGACAGCCACTTTACTGACAACTGGCCGTTGTATATTACCGGCAACCTGCTGAATGGCTATCGTGCTTAATAGGCATACGATTCCGTGGTGACCTCTTCTTTAATGCTCTGAGATTGCATCTGGATCGGGCAAGGCACTTGCAGGTTCCAGCTTCGAGGTTCGATCTCTTTGGAGGCTCTGAAACTCTGAAAAACCTTCGAAGTTCTAGCGAGAATCTCGTCCCAGATCTCAGTTAAA_-_ATGGTGGACGTATTCAGTGGCGATGAGACTGCTCCATTCTTCGGCTTCCTTGGGGCCGCCGCAGCGCTCGTGTTCTCCTGCATGGGAGCTGCATATGGAACTGCGAAGAGTGGCGTGGGCGTGGCCTCCATGGGTGTGATGAGGCCGGAGCTTGTGATGAAATCGATTGTTCCAGTCGTCATGGCTGGAGTGTTGGGTATTTATGGTTTGATTATTGCTGTGATTATCAGCACAGGAATTAACCCCAAGGCAAAGTCCTATTATCTATTTGATGGTTACGCGCATCTGTCATCGGGACTGGCTTGCGGGCTCTCGGGTCTTGCTGCGGGAATGGCTATTGGTATTGTTGGTGATGCCGGTGTCAGAGCAAATGCACAGCAGCCAAAGCTCTTTGTTGGTATGATCCTCATATTGATCTTTGCAGAAGCACTTGCACTCTATGGCCTTATAGTTGGTATTATACTTTCTTCTCGAGCTGGCCAGTCACGAGCAGATTAA___AGAAGTTGCAGTTGGTCTTCTGTTTACTTGGTTCATTTGTCAGTTTTTTAGCAAGACTGCTGTCTTCTGCAGTGGAAATGTGATTGTTGTTTCCAGTAGGAGATAATATTTTGCTCAAGATTCATTATTATTCTCTTGGTTTGGAATTTTAGACTAAAGAATTTAGTGATCAATTTGAAAGCTCATTACAATGTGGAAATTGAACCAGTTAACAAGTGCACGTTACTGCTGGTGTCATTTGGCACGTTATGAATTTGAAATCAAATCGTATGATTCTCCTTTTTGAGCTACTCGCTGCAGATTACTGTAGATACCTCCCCCTTTTTGGTCTCTGCTGTTGATATATTGAAATTAGAACAAAAATAATGAATGAAGAAAACTGATTAAAATTCCTCTTTTCGTTGCGAAGATGGAAAAGTATGGGAGTATGTCTTGGTTAAAATTTGAGCGGGGAAACTTATTTTGAAATAGAATCTTCATATATATACGTCTTTTTCAAAATCTTATCGAAGGAGCGAACTTCCTCCAAGAAAAGTTTCCCTATTAATTATACGAAAATTGTATCAGCTTAGTCCTCTTAGCTTTAAGTGGATTGCTGGACCAATTATTGTCTACATTATTGAC

Fln Alignment:

sp_v1.1_unigene22257___MVDVFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD
A9NL02_______________MVEAFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLSGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRSD

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1030	91			8	0.999807
1192		66	33		1.0
1321	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain