SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22244

Length: 1707 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22244

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-galactose/UDP-glucose transporter-related	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	adenosine 3-phospho 5-phosphosulfate transporter 1	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UAA transporter	IPR013657	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRK5

Fln msg: your sequence is longer than subject: 363 - 329

Fln protein: MASPEGMTIFDNKTSKMAISVVGIMTTLVIYGVLQEKIMRVPYGDGDESAYFKYSLFLVLCNRVLTCAASAIFLLANKKTMGPAAPLYKYGAVSVSNILTTTCQYEALKYVSFPVQTLAKSAKMIPVMVWGTLIMQKKHSGRDYLLAVFVTAGCALFILYPASEDITRYNKEKESTIWGIFLMIGYLGFDGFTSTFQDKLFKGYNMEIYNQIFYTTLCSCAISMLGLLIQGHLLAAIDFVLSHPDCLFDITLLSMVATASQFFISYTIRTFGALTFATIMTTRQLISILLSCIWFVHPLSWKQCIGAIVVFGSLYSKSFFNAQRKKLDLPKQPETEEDNPLLYEEKRHRNDLLSTSVDVSSR*

Protein Length: 364

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCTACTAAAACGACAATTCAATGTCGTTGGAATGTTAGAAAATAGCGAAGAGATCGCTTCCAAGGGAGAGATTTAAGCAAAATGAAGTTAAATCCGGACTTACTTAAAAAAATTCCTGCGGGCGTTCATCATGCACTCGCCCTCCTTCTCCGAATTAAAACGTCGTGACCTTGGCTGTCACTCAGTGTTCGAATCTCGGTCGCCCGAGAAGGGAGAAAATTGCGCGAATGATAGAACGAGGGTTTCAGAGGAAAATTTGAAATATGTATATATTTCTCTCTGGAACGTAAACCTGGGATAAAAGAATATCAATAGTGATAGCAGGTTGGCG_-_ATGGCAAGTCCAGAGGGCATGACCATATTCGACAATAAAACTTCAAAAATGGCGATTTCAGTGGTTGGGATCATGACCACTCTCGTTATTTATGGCGTATTGCAGGAAAAAATAATGCGTGTTCCATATGGGGATGGGGATGAAAGTGCATACTTCAAGTATTCACTGTTTCTTGTTCTCTGCAACCGTGTTTTGACATGTGCCGCTTCTGCTATATTTTTACTGGCAAACAAAAAGACTATGGGCCCTGCTGCACCGTTGTATAAATATGGGGCTGTTTCAGTGTCAAATATTTTGACAACAACATGCCAATATGAGGCACTAAAGTATGTGAGCTTTCCAGTTCAAACATTGGCTAAATCTGCAAAAATGATACCTGTAATGGTTTGGGGAACTCTTATAATGCAAAAGAAACATAGTGGGCGTGATTATCTTTTGGCAGTTTTTGTTACAGCAGGGTGTGCTTTGTTCATTTTGTATCCAGCATCTGAAGACATTACACGCTATAACAAAGAAAAGGAAAGCACAATTTGGGGAATTTTCTTAATGATAGGTTATCTTGGATTTGATGGTTTTACTAGCACATTTCAGGATAAGCTCTTCAAAGGTTACAATATGGAAATATACAATCAAATATTCTACACTACCCTTTGTTCTTGTGCAATTAGCATGCTTGGGCTTTTGATTCAAGGTCATTTGCTGGCAGCTATAGATTTTGTCTTGTCTCATCCTGATTGCCTTTTTGATATTACACTCCTGTCTATGGTTGCAACAGCTAGTCAATTTTTTATTTCTTATACAATTCGTACATTTGGGGCACTTACCTTCGCCACTATTATGACTACAAGACAGCTTATCAGCATCTTACTTTCGTGCATATGGTTTGTGCACCCCTTAAGTTGGAAACAGTGTATAGGAGCAATTGTAGTCTTCGGTTCTTTGTATAGCAAAAGCTTCTTCAATGCTCAAAGGAAAAAGCTTGATTTGCCAAAACAACCAGAAACAGAAGAGGATAATCCGTTGTTATATGAGGAAAAACGTCATCGTAATGATTTATTGTCCACATCTGTTGATGTATCTTCAAGGTAA___TGGCAGTTGTTACCTTTGATGAGTGCACTTGTGTACTGAGCTGTAAAGGCAACTGGTGGATAACATTATCCATTATTGATTGAATTTCAAGAACGGAGTTTACACAGATTTACAGGCTGTAATACTTGTCTAATTATGCTAATAGAAACCAATGTCACTGCATTTGAAATGAGTACTTTGTAATGTACCCAGAGCTCTGATGTGGTCTCTAATATAAATTTTGAAATACACACATTTTGGGCCTTATATCCTAAATATACT

Fln Alignment:

sp_v1.1_unigene22244___KMAISVVGIMTTLVIYGVLQEKIMRVPYGDGDESAYFKYSLFLVLCNRVLTCAASAIFLLANKKTMGPAAPLYKYGAVSVSNILTTTCQYEALKYVSFPVQTLAKSAKMIPVMVWGTLIMQKKHSGRDYLLAVFVTAGCALFILYPASEDITRYNKEKESTIWGIFLMIGYLGFDGFTSTFQDKLFKGY----------NMEIYNQIFYTTLCSCAISMLGLLIQGHLLAAIDFVLSHPDCLFDITLLSMVATASQFFISYTIRTFGALTFATIMTTRQLISILLSCIWFVHPLSWKQCIGAIVVFGSLYSKSFFNAQR
A9NRK5_______________RLLFCVGGIFGAYIYQGFLQETLSTKRFGPNGQR--FQHLPFLNFAQNVVCLAWSYLMITLWSTKSSGAAPPWKYWSPSITNTIGPALGLQALKYISYPAQVLVKSSKMIPVMLVGALFYGIKYTVPEYICTFLVASGVSLFALSKSSSK-TVSKLAHPNAPWGYGLCLANLLLDGYTNSTQDNIKRRYPKTNGWDIMLGMNLWGSIY-------SFFYMFLFPGGGGFEALQFCKQHPEAAWDILWFCVCGAIGQNFIFMTISLFGSLANTTITTVRKFFSILVSSLFSGNPLSDRQWISVFMVFGGLAYQIYLKRRR

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
187		75		25	0.996473
188	25		75		0.996473
191	25		75		0.996473
193	25		75		0.996473
195	25	75			0.996473
196		75		25	0.996473
197	25			75	0.996473
198	25			75	0.996473
199			75	25	0.996473
200	25		75		0.996473
201	25	75			0.996473
203	25		75		0.996473
204	25			75	0.996473
205		75	25		0.996473
207		75		25	0.996473
208			25	75	0.996473
210	75			25	0.996473
1117		12		87	0.992554
1122	87		12		0.992554
1123	12			87	0.992554
1124		12	87		0.992554
1125		12	87		0.992554
1131	87		12		0.992554
1133	87			12	0.992554
1135		87		12	0.992554
1136		12		87	0.992554
1138		12	87		0.992554
1225		14		85	0.993533
1555			80	20	0.999996
1611	11			88	0.923564
1619			71	28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain