SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22239

Length: 1526 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22239

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Extensin-like protein n=5 Tax=Picea sitchensis RepID=A9NMR9_PICSI	-	-	3.0e-06	32%
FL-Next	tr=Extensin-like protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pollen Ole e 1 allergen/extensin	IPR006041	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: E0ZE90

Fln msg: STOP codon was not found. Distance to subject end: 322 aas, No stop codon before M and low homology subject, your sequence is longer than subject: 497 - 159

Fln protein: MRVVMESSVRTLCLVMVVFAVHVVLWNDGVCCGEPKTSLVTGMVFCDQCLLGTLSALSQPLAGAQVSLEYSRGSTNAAFWASTDENGVFSIIVEEDDFQIHGDGRCTVKLVRSTDMACYIPTDIANGSSGATISSAGGVYRERAVYYVGPFAYRMRRPATACNALQLGSRHGIILESSELPVQSLGALSRGLKAVGRSFAEAMPTVPSSASTIPSTATSTAKPPSYSIPVTRPTPAHGDHSRVKHSGVPTSNNHSPTKCIPLPPVPLDPELITKLHYPPCKDEPPTGGGATPRPSTPHASSPIGPGSPFLPPTASPPKVGSAPPKANSRSYGGSPKPKLPLFPPLPPPTLTSPSYGGSPIPKLTPSPQLSSPPPASGSKPAPPSPTTPSPPSPPHKHPIHKPHPHHRPSPRAPLPPTKPETPISHPSLPPYKNPLVPPPPTNAKTPISHPSPSPYKNPPPPSGSQVRYPLPPPSYVKPSPPLTPPPQSPSTFAVSDR

Protein Length: 498

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACAGAAGTG_-_ATGAGGGTGGTGATGGAGTCTTCTGTAAGAACTCTGTGTCTGGTCATGGTGGTCTTTGCAGTTCATGTAGTGTTATGGAATGATGGAGTTTGCTGTGGGGAACCCAAGACTTCCCTGGTCACTGGCATGGTATTCTGTGATCAGTGCTTGCTGGGTACACTGTCTGCTCTTAGCCAACCCCTTGCAGGAGCGCAGGTCAGTCTGGAATACTCCAGAGGGTCCACAAATGCTGCTTTTTGGGCATCCACTGATGAGAATGGTGTATTCTCGATCATTGTGGAGGAAGACGACTTCCAAATTCACGGAGATGGAAGATGCACCGTTAAACTAGTCAGAAGCACTGACATGGCTTGTTATATACCTACTGATATTGCGAATGGTAGCTCAGGTGCTACTATCTCTAGCGCTGGTGGAGTCTACAGAGAAAGAGCTGTGTACTATGTTGGGCCATTTGCTTATAGGATGAGGCGACCTGCAACGGCCTGCAATGCACTGCAATTGGGTTCTAGGCATGGGATAATATTGGAGAGCTCTGAGTTGCCAGTTCAATCTTTAGGAGCTTTATCTCGAGGCCTCAAAGCAGTGGGCAGAAGCTTTGCAGAAGCAATGCCCACTGTTCCTTCGAGTGCTTCAACAATACCATCTACTGCAACTTCTACAGCAAAACCCCCATCTTATAGCATTCCGGTCACTAGGCCTACGCCAGCTCATGGAGACCACAGCAGGGTTAAGCATTCTGGGGTCCCTACTAGCAACAACCATAGTCCTACCAAATGCATTCCTCTTCCTCCTGTTCCTCTGGATCCTGAGCTCATTACAAAACTACATTACCCACCTTGTAAAGATGAACCTCCCACGGGAGGAGGAGCCACACCCCGGCCTAGTACTCCTCATGCTTCTTCACCAATTGGGCCTGGTTCTCCCTTTCTACCTCCTACTGCCAGTCCACCTAAAGTTGGTAGTGCCCCTCCAAAGGCTAACTCCCGTTCCTATGGCGGTTCTCCAAAACCAAAACTTCCGTTGTTTCCACCACTACCACCCCCAACACTTACTTCCCCTTCCTATGGTGGCTCTCCAATACCAAAACTTACACCATCCCCGCAACTGTCATCCCCGCCACCTGCTTCTGGGTCTAAACCTGCTCCCCCGTCTCCGACCACCCCTTCACCTCCCAGTCCTCCACACAAGCATCCAATCCATAAACCCCATCCTCATCACAGGCCATCACCGCGTGCACCACTACCACCAACAAAGCCTGAAACTCCTATCAGCCACCCTTCACTGCCACCCTACAAAAATCCTCTTGTACCACCACCACCAACAAATGCTAAAACTCCTATTAGCCACCCTTCACCATCACCCTACAAAAATCCACCACCTCCCTCTGGTTCTCAGGTTCGATACCCACTTCCACCACCCTCATATGTGAAGCCATCTCCTCCCCTCACCCCTCCACCCCAGTCTCCCTCCACGTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene22239___VTGMVFCDQCLLGTLSALSQPLAGAQVSLEYSRGSTNAAFW--ASTDENGVFSIIVEEDDFQIHGDGRCTVKLVRSTDMACYIPTDIXXXXXXXXXXXXXXVYRERAVYYVGPFAYRMRRPATACNAL
E0ZE90_______________VTGKVYCDNCAAGYPTRISPPIPGATVAVECKDRAGKRLFYNEQSTDNNGLFNIAVQGE----HEHDACEAFTV-SSPTSCNIPTDSSRGPVFLTHNNGINSDERK----TGPFAYRSTTTHSACQAV

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
79	77		5	16	1.0
83		16		83	1.0
84			83	16	1.0
88	16			83	1.0
89		16		83	1.0
91		16	83		1.0
92	16	83			1.0
199	40		59		1.0
309		8		92	0.999718
323	91		8		0.999807
327		91		8	0.999807
424	10		90		0.999898
442		7	92		0.999602
754	90		10		0.90298
755			90	10	0.90298
757	90		10		0.90298
758			90	10	0.90298
761		10		90	0.90298
763	90			10	0.90298
764	90		10		0.90298
767	90			10	0.90298
768			10	90	0.90298
771	10			90	0.90298
772		10	90		0.90298
773			90	10	0.90298
774		10	90		0.90298
775	10		90		0.90298
880		12	87		0.992554
882	87	12			0.992554
883		87		12	0.992554
1016		10	89		0.999919
1136	87			12	0.992554
1137	87			12	0.992554
1139			12	87	0.992554
1142		87	12		0.992554
1145		87	12		0.992554
1146	12	87			0.992554
1148	12	87			0.992554
1204		90	9		0.999872
1349		88		11	0.923564
1350	88			11	0.923564
1354	88		11		0.923564
1355		88		11	0.923564
1356	88		11		0.923564
1358	88		11		0.923564
1361	11	88			0.923564
1362		11		88	0.923564
1364	88		11		0.923564
1365	88		11		0.923564
1366	88	11			0.923564
1421	25		75		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1341	1353	ACC ACC ACC ACC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain