SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22217

Length: 1189 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22217

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	antioxidant/ oxidoreductase	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Blast2go	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	83%
Blast2go	Thioredoxin fold	IPR012335	-	83%
Blast2go	Thioredoxin-like fold	IPR012336	-	83%
Blast2go	Thioredoxin-like	IPR017936	-	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPM4

Fln msg:

Fln protein: MPPLSSKAMPLGSPAPDFELPEPLTGKVWKLADFEGHPALLVTFICNHCPFVVHLKKDIVKLANDYMPRGLAIAAISSNSAVTHPEDGPDFMAEDARTFEYTFPYLYDETQEVARAYGAVCTPEFYLFKKNGNQPFELAYHGQFDDSRPNNNKPITGSDLRQALDCVLSDQPLNFAPKPSVGCSIKWHPSENV*

Protein Length: 195

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTTTTGTTGGTAGAATTCTCTGATGAAACAAAGGCGTCAACATCGCACCTAAGCCAAAACAAACGTTGACGAATGGTCCGTTGAATGTGTTATTAACCCCACCAGTGAGCAGTACATCGGTGGTTCATGAATGGTAGGTTGAATGCATCATTAACACCACCATAAATGGAGGCAGAGGCCATTCACGATTGTCGTTGTGAATAGTGAAATAGGGTCTCTGCCGTTAGTGCTTCCACTGCGCCAACGCC_-_ATGCCTCCATTGTCATCGAAGGCCATGCCTCTCGGATCCCCAGCCCCTGATTTTGAGCTTCCAGAACCTCTCACTGGCAAGGTTTGGAAATTGGCTGACTTTGAAGGACATCCCGCACTGCTGGTGACGTTCATCTGCAATCACTGCCCATTTGTTGTGCATTTGAAGAAGGACATTGTCAAGCTTGCAAATGATTACATGCCAAGGGGGCTTGCAATTGCAGCAATCTCTTCTAATTCTGCTGTCACACACCCTGAGGATGGTCCAGATTTCATGGCTGAAGACGCTAGGACGTTTGAGTATACGTTCCCATATCTATATGATGAGACTCAAGAAGTTGCACGGGCTTATGGAGCTGTTTGCACTCCTGAATTTTACCTGTTCAAGAAGAATGGAAATCAGCCATTTGAGCTTGCTTATCATGGACAATTCGACGATTCCCGACCAAATAACAACAAACCTATTACAGGAAGTGACTTAAGGCAAGCTTTGGATTGTGTCCTGAGCGACCAACCACTAAATTTTGCACCAAAGCCAAGTGTTGGATGCAGCATTAAGTGGCACCCGAGTGAAAACGTGTAA___TGTTGTCTTCCTCGTGACTCCGGTTAATAAATATTCTCAACAAAAGTTGTCTCTGGTTTCAGACTTATATATGATGCTGTTAGTAGTATTGGTTGGTTTTGTTGAACTCTGCACTATCTGATGCTGTTAGTAGTATTGGTTGGTTTTGTTGAACTCTGCACTATCTTATTTCAATCACCATGAAAGTGATTGAGGTCAATTATATTTATAGTGACTAGAATATAATTTCATAAGTTAACGACTATTATTACTAGTGCGAATTTTTGTTGTTCATGTTAGTATTTTCTTCACTTTTATTGTAGTCGTGATATCTGCAAAAATGCTAGTGCGA

Fln Alignment:

sp_v1.1_unigene22217___MPPLSSKAMPLGSPAPDFELPEPLTGKVWKLADFEGHPALLVTFICNHCPFVVHLKKDIVKLANDYMPRGLAIAAISSNSAVTHPEDGPDFMAEDARTFEYTFPYLYDETQEVARAYGAVCTPEFYLFKKNGNQPFELAYHGQFDDSRPNNNKPITGSDLRQALDCVLSDQPLNFAPKPSVGCSIKWHPSEN
A9NPM4_______________MPPLESKTMPLGSTAPDFELPEPLTGKVWKLADFEGHPALLVTFICNHCPFVVHLKKDIVKLANDYIPRGLAIAAISSNSTVTFPEDGPDFMAEDARKFEYPFPYLYDETQEVARAYGAVCTPEFYLFKKNGNQPFELAYHGQFDDSRPNNNKPVTGSDLRQALDCILSGQPISSVQKPSVGCSIKWHPSEN

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
127	80			20	0.995493
128		80	20		0.995493
129		80	20		0.995493
130		80	20		0.995493
131		80	20		0.995493
244	80			20	0.995493
1106		4		95	0.995881
1115		5		94	0.998578

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain