SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22199

Length: 1534 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene22199 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Disease resistance associated protein (Fragment) n=1 Tax=Picea abies RepID=Q2VWL9_PICAB	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	leucine rich repeat family expressed	-	-	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKC3

Fln msg: your sequence is shorter than subject: 269 - 835

Fln protein: NFRQAEALVLVFSASNYFIPTFLSSMKNLKVLIVFNYGSKRATVNGLPRLSSLTQLKAIRLERLHVPALHEHSKVLQNLEKLSLSLCEGLGSMSRFNNIQSSLKLPSMLDFNLDHCCDLEELPPGICDMSSVENWTITNCHLLRNLPDNLGKLSSLRMLRLSACVGLKELPESIGKLAKLEYLDISLCECLKELPEEMGKLRNLEELDMRECSRLRKLPRSVGGMKSLKRVICDEKIAQQWNRVKNSAMMELIVEVAEAHFSLDWLDG*

Protein Length: 270

Fln nts: AATTTTCGTCAAGCAGAGGCATTAGTCCTAGTTTTTTCTGCAAGCAATTACTTTATTCCGACATTTTTGAGTTCTATGAAAAACCTGAAAGTTCTAATAGTATTCAATTATGGCTCTAAGAGAGCCACAGTGAATGGTCTGCCAAGGTTATCTTCACTTACTCAGCTCAAGGCTATTCGCTTGGAGAGGTTGCATGTGCCCGCACTTCACGAGCATTCTAAAGTCTTGCAAAACTTGGAGAAGCTATCTTTGAGCTTATGTGAAGGGCTTGGAAGTATGTCACGGTTCAACAACATCCAGTCGAGCTTAAAGCTTCCAAGCATGCTAGATTTTAACTTGGACCACTGCTGTGATTTGGAGGAGTTGCCCCCTGGTATTTGTGACATGTCTTCAGTTGAAAATTGGACTATCACTAATTGTCACCTTCTTCGAAATTTACCTGATAACTTGGGGAAGCTCAGCTCTTTAAGAATGTTGAGGCTATCTGCATGTGTAGGCCTAAAAGAGCTTCCAGAGTCCATTGGGAAACTTGCAAAGCTGGAATATCTGGACATTTCGCTATGTGAGTGCTTAAAAGAGCTTCCCGAGGAAATGGGAAAACTAAGGAATCTTGAGGAGCTTGACATGAGAGAGTGTTCCCGGTTGAGGAAATTGCCTAGATCAGTTGGAGGGATGAAATCTCTAAAGCGTGTTATTTGTGATGAGAAGATTGCACAGCAATGGAATCGTGTCAAGAACTCTGCTATGATGGAGCTTATAGTTGAAGTTGCGGAAGCACACTTCAGCTTGGATTGGCTCGATGGTTGA___CATCCTACGTGCTTCCATCCATTTTGTGGAGAGATTATATGTGCTCTCCTGCTCGAACTTCAATCTATTGAAGGGTAAGGAGGGTACTGCAATCAAAAGAGAAGAGGGATGGAAGCAGCAAAGAGGGAGCAGCAAAACAGTTGTCTTTGCTGCTACCCTGCCCAATTGTCCAAATCTACCGTTGGGTTAAGGAGATATGTTTGTATGGTATGTTGTGAACTAAGTGTGCCGATGGTGAAGATGGAGGAGCAATAGAGCTTGTGATTATGCATGTGTAGGACAATCACCTGTTCAAAGTTCTAACCTGCCCCGTGCAAAGTTCCACCTATTTCTGTTTGAGTTGGGGAGTGTTCCTGCCATTTATGAAGGGGAGAGATTTCTGATATCCAGGATTTGTTGAAGTGTGACAGAGTAGACGAAGAGTGTGAGGGATTTCTGATGTACAGGACTTGTTTGTGTGACAGAAATATACAAGCTTTGGAGAGATACAGGTTTGGAATGGATTGGATAAGGAGTATTCGAAGTGTAAAATCATATTTTAAATCCTTTCTTATTTTCAGTCAGCTGTCTCACGAGATGGACCTTGTACAGCCTCCTATCTTAAGAGTGGACTACTTGTCTTTTGATCTTTGATAATTTTAGTGGCGTCAAGGAGCTAGCATAAAACTTGAATATATGTATATATATCTATATGAATGAATGAATGAAAGATTGAATAACAAAAAAA

Fln Alignment:

sp_v1.1_unigene22199___NFRQAEALVLVFSASNYFIPTFLSSMKNLKVLIVFNYGSKRATVNGLPRLSSLTQLKAIRLERLHVPALHEHSKVLQNLEKLSLSLCEGLGSMSRFNNIQSSLKLPSMLDFNLDHCCDLEELPPGICDMSSVENWTITNCHLLRNLPDNLGKLSSLRMLRLSACVGLKELPESIGKLAKLEYLDISLCECLKELPEEMGKLRNLEELDMRECSRLRKLPRSVGGMKSLKRVICDEKIAQQWNRVKNSAMMELIVEVAEAHFSLDWLDG
B8LKC3_______________NFRQAEALVLNFSASNYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPAPSSLTQLRTIRLERLNVPSLQEHSRAFQSLEKLSLSLCEGLGNMSRFNSTQSSLKLPIMLDFNLDHCCDLEELPPGICDMSSVENWSITNCHLLQKLPDDMGKLCSLRMLRLSACLGLKELPDSIGKLGKLEYLDISLCECLKELPEEIGQLKKLQVLDMRECSRLRKLPKSVEGLKSLKHVICDEKIGQQWLRVKSSVLKELRVEIVDAHFSLDWLDG

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
257		20		80	0.995493
344	80	20			0.995493
345		20		80	0.995493
348			75	25	0.996473
1475		33		58	1.0
1493		27		72	1.0
1495	11	88			0.923564
1496	87	12			0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
20	36	TTCA TTCA TTCA TTCA T	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain