SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22198

Length: 371 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

>sp_v1.1_unigene22198
TACATGGGGCTCTTCGCATCTCTTTGGATTGCTAGGGTTTGAGGATTCTTGGCTTCTGAGCATTCGAAATCGTGGTAGCCTGATCCGATCATTTACCCTGTAGAATCCTTGCATCAGATGTTTGTGTTACAGCGCCAGTAAAAGCCATGGCAGTTACATTTCCAAATCTGAGCACAGAGGCTGGCCTCAAGCATCTTGATGAATATCTTCTTTCAAGAACTTTTATAACTGGGCATCAAGCTACAAGAGATGATATTACTGTCTATGGCGCCATTAGCAAAGCCCCTGGACCTAACTTTCCTAATGTGTCTAGGTGGTACAACCATATCAGTGCCCTACTGGCTTCGAGTTTTCCTGGTGAGCCTATCGGT

Ace file of the UniGene sp_v1.1_unigene22198

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative elongation factor n=1 Tax=Cryptomeria japonica RepID=Q1XG58_CRYJA	-	-	1.0e-28	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	elongation factor 1-	-	-	1.52098e-33	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glutathione S-transferase, C-terminal-like	IPR010987	-	1.52098e-33	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NML6

Fln msg: Distance to subject end: 152 aas, your sequence is shorter than subject: 75 - 227

Fln protein: MAVTFPNLSTEAGLKHLDEYLLSRTFITGHQATRDDITVYGAISKAPGPNFPNVSRWYNHISALLASSFPGEPIG

Protein Length: 76

Fln nts: TACATGGGGCTCTTCGCATCTCTTTGGATTGCTAGGGTTTGAGGATTCTTGGCTTCTGAGCATTCGAAATCGTGGTAGCCTGATCCGATCATTTACCCTGTAGAATCCTTGCATCAGATGTTTGTGTTACAGCGCCAGTAAAAGCC_-_ATGGCAGTTACATTTCCAAATCTGAGCACAGAGGCTGGCCTCAAGCATCTTGATGAATATCTTCTTTCAAGAACTTTTATAACTGGGCATCAAGCTACAAGAGATGATATTACTGTCTATGGCGCCATTAGCAAAGCCCCTGGACCTAACTTTCCTAATGTGTCTAGGTGGTACAACCATATCAGTGCCCTACTGGCTTCGAGTTTTCCTGGTGAGCCTATCGGT

Fln Alignment:

sp_v1.1_unigene22198___MAVTFPNLSTEAGLKHLDEYLLSRTFITGHQATRDDITVYGAISKAPGPNFPNVSRWYNHISALLASSFPGEPIG
A9NML6_______________MAVAFPNLSTEVGLKHLDEYLLSRTFITGHQATRDDIAVYGAISKVPGPNFPNVSRWYNHINALLASSFPGEAIG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
177	62		37		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain