SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22187

Length: 1191 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22187

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	thaumatin-like protein, putative [Arabidopsis thaliana] gb\|ACF20472.1\| At5g24620 [Arabidopsis thaliana]	-	-	2.0e-17	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	protein	-	-	0.0	51%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Thaumatin, pathogenesis-related	IPR001938	-	0.0	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEF8

Fln msg:

Fln protein: MVGSRSSDQLTIAARAAIFLVTFTSFLCSCAAESPAAYKTISVANNCAFPVWPATVGSTNFPPTQMNKVGAGESFSWNVDPFWSGSIWGRTGCVFNSQGIGGCDSGDCGGKLQCKDESQDQITAITKAEFELLGGIAKPDTYSVTLENGYNLPMSVVPSYAANNVSNSRPCESMECRANADVVCPKDLQMKKKGSVVIACNGHFHGYLPSSLAFSEAFKKACPRAFPFQSSTICPPSTASYTLIFCPRRPSP*

Protein Length: 254

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCCTATTTCTATCTTTTTGCTTGCAGAGATTTCAAATTGCGGTTATTTGTGAAGTTGCCAGTAACCAAAAATTAGACGCAGTAAGTTCTCCTTCAATCTTTGTACGCTGTTATTAAAATTGTGGCGTGACATCTTCACTGCAGAGGCAAATTCAGGGAAGTCTGTGCATTTACATTTTGGTGTTATAGAGACTGTTATTACAACTAGTCTCCAAC_-_ATGGTGGGAAGTCGAAGCAGCGACCAGTTAACAATAGCGGCACGGGCAGCTATATTTCTTGTTACATTTACGTCTTTTCTTTGTTCTTGCGCTGCAGAGTCACCTGCGGCTTATAAGACGATAAGTGTGGCGAACAATTGTGCATTTCCGGTGTGGCCTGCGACTGTGGGTTCAACTAATTTTCCTCCCACTCAGATGAATAAAGTGGGAGCAGGGGAGTCATTTTCATGGAACGTAGATCCATTCTGGTCGGGATCCATTTGGGGGCGGACTGGTTGTGTCTTCAATTCCCAAGGGATCGGAGGCTGCGATTCCGGTGATTGTGGAGGAAAGCTGCAGTGCAAAGACGAGAGTCAAGATCAAATCACGGCAATCACAAAAGCTGAGTTCGAACTTTTGGGAGGAATAGCAAAACCAGACACGTATTCGGTTACGTTGGAGAATGGTTACAATCTTCCAATGTCGGTGGTTCCAAGTTATGCAGCCAATAATGTCAGTAACAGTCGGCCCTGTGAGTCGATGGAGTGCAGAGCCAACGCGGATGTGGTGTGCCCGAAAGACTTGCAAATGAAGAAGAAAGGGAGCGTGGTTATTGCGTGCAACGGTCATTTCCACGGATATTTGCCGAGTTCGCTCGCGTTCAGCGAGGCATTTAAGAAGGCGTGTCCTCGTGCATTCCCCTTCCAAAGTAGCACCATATGCCCTCCTTCCACGGCTTCCTACACCCTCATCTTCTGCCCTCGCCGTCCATCGCCCTGA___ATACGTTTAATTCCGTTGGGCTTGGCTTCTCTGGTTCAATCTTTCTACTACAAGGCATTTCGGAATTTTGTGTACGAATCGCGAATGCAGAGGTTGCATTACTTAGGTATGATTGCAAATAGTGATTGGTGCATAAGGGAGGATGCATAGTTCTTTAGTTCCCATTTTTGTCTTCAGTGCACAGCATTTTG

Fln Alignment:

sp_v1.1_unigene22187___MVGSRSSDQLTIAARAAIFLVTFTSFLCSCAAESPAAYKTISVANNCAFPVWPATVGSTNFPPTQMNKVGAGESFSWNVDPFWSGSIWGRTGCVFNSQXXXXXXXXXXXXKLQCKDESQDQITAITKAEFELLGGIAKPDTYSVTLENGYNLPMSVVPSYAANNVSNSRPCESMECRANADVVCPKDLQMKKKGSVVIACNGHFHGYLPSSLAFSEAFKKACPRAFPFQSSTICPPSTASYTLIFC
D5AEF8_______________MVGSRSSHQLTMTAWISMFLVTFTYFLCLSAAESPMVYKTIRVVNNCAFPVWPATVGSTDLPPPQMRKVRAGESYSWKADPFWSGSIWGRTGCVFNSQGIGGCDSGDCGGNLQCKDESH--IMAITKAEFELLGGIAKPDTYSVTLEKGYNLPMSVDPSYAANNISSSRPCESMECTANANVVCPKNLQEKKKGSVVTACNGHYDGYLPSSPAFSKAFQKACPRAFPFRSGTICPPSTASYTLTFC

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
49	33		66		1.0
97	80		20		0.995493
105	20	80			0.995493
136	60			40	1.0
137	80			20	0.995493
138	20			80	0.995493
140	60			20	0.99255
146	60			40	1.0
147			40	60	1.0
172	20		80		0.995493
173		80	20		0.995493
240	83			16	0.994512
284		66		33	1.0
307	70		30		1.0
391	12		87		0.992554
395	12			87	0.992554
398	12	87			0.992554
400	12			87	0.992554
404	85	14			0.993533
1113	83	16			0.994512
1115			83	16	0.994512
1116	83			16	0.994512
1122	83	16			0.994512
1129	83		16		0.994512
1131	16			83	0.994512
1133		16	83		0.994512
1141			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain