SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22136

Length: 952 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22136

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pop3 peptide	-	-	2.0e-30	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	pop3 peptide	-	-	7.00649e-45	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to fungus	GO:0050832	Biological Process	7.00649e-45	78%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	7.00649e-45	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Dimeric alpha-beta barrel	IPR011008	-	7.00649e-45	78%
Blast2go	Stress responsive alpha-beta barrel	IPR013097	-	7.00649e-45	78%

Full-Lengther Next Prediction

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
97	25		75		0.996473
101		75	25		0.996473
102		75	25		0.996473
103			25	75	0.996473
116	25			75	0.996473
124	87			12	0.992554
155	12			87	0.992554
247	90		10		0.90298
248		10		90	0.90298
251			10	90	0.90298
252	90		10		0.90298
255			80	20	0.999996
258		90	10		0.90298
259	10	90			0.90298
260		88		11	0.923564
261	77		11		0.968132
264	77	22			0.999999
266	88	11			0.923564
270		11		88	0.923564
271			11	88	0.923564
275	88	11			0.923564
277			88	11	0.923564
280		11	88		0.923564
281	77		11	11	0.968132
284			88	11	0.923564
285		11	88		0.923564
288		11	88		0.923564
345	93	6			0.999453
350	93			6	0.999453
354	3		85	3	0.997433
421	66	4			1.0
728	92			7	0.999602
748	8		92		0.999718
769		9		90	0.999872
792		16		83	0.994512
806		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain