SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22134

Length: 1373 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22134

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-isopropylmalate dehydratase, putative n=1 Tax=Ricinus communis RepID=B9SXE3_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	3-isopropylmalate small subunit	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	0.0	83%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Blast2go	Aconitase A/isopropylmalate dehydratase small subunit, swivel	IPR000573	-	83%
Blast2go	3-isopropylmalate dehydratase, small subunit, subgroup	IPR011827	-	83%
Blast2go	Aconitase/3-isopropylmalate dehydratase, swivel	IPR015928	-	83%
Blast2go	Aconitase/isopropylmalate dehydratase	IPR015937	-	83%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMS1

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 266 - 291

Fln protein: MSMAAINATRSSSVSTNLTHFAANTRSKLALLHIRHISLHSLHKNALNLHFSTPRKNRISTFSVRNPPRAIASQSYDAPTEPNKKIFHGKCFVVDDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYAMIGLPARYGRFIEDGQTKTQYSIVIAGANFGCGSSREHAPVALGAAGVKAVVAEYYARIFFRNSVATGEIYPLESECRVCDECKTGDIVTVEIEGNKLINHTTGKEYVLKPIGDAGPVIDAGGIFEYARKTGMIAAPSS*

Protein Length: 267

Fln nts: GATTTATAAATCTTTGTCAATGGTTAACGACCCTGCGCTGCAAGCTCGATAGCCGATAACACACGCGCCCGGTGACTAGATGGCGCTATCGAACTTACAGCTAAGCCGGTATTTAATACGTCGTGACCTTGGCTGTCACTCAACCATACAATGATACTCCATAATCCTACGACTTTTCTGTGAACTCTTACTTTCGGAAGCTCTTGTCAGTCTGGTTCATAGG_-_ATGTCAATGGCGGCTATAAACGCTACGCGGTCTTCATCGGTAAGCACAAATTTGACGCATTTTGCTGCAAATACACGCTCAAAGTTAGCTCTGCTTCATATTCGACATATCTCACTGCATTCTCTGCACAAAAATGCCCTAAACTTGCATTTTTCTACCCCACGAAAAAACAGAATATCAACATTCTCTGTACGGAATCCCCCAAGAGCAATAGCATCTCAATCTTATGATGCACCCACAGAGCCAAACAAGAAAATTTTTCATGGAAAATGCTTTGTGGTAGACGACAACATAGACACTGATCAAATCATCCCAGCAGAATATTTAACCCTTGTGCCCTCCAAACCAGACGAATACGAAAAGTTGGGCAGTTATGCCATGATTGGCCTTCCTGCTAGATATGGCAGATTCATTGAAGATGGCCAGACTAAAACCCAATATTCCATTGTCATTGCTGGGGCCAATTTTGGATGTGGATCATCCAGAGAGCATGCCCCTGTGGCTCTTGGGGCGGCGGGAGTGAAGGCTGTAGTGGCGGAGTACTATGCCAGGATATTTTTCAGGAACTCTGTGGCCACCGGTGAGATCTATCCACTGGAGAGCGAGTGCCGGGTTTGCGACGAATGCAAAACTGGTGATATTGTCACTGTGGAGATTGAGGGAAATAAGCTTATCAATCACACCACTGGAAAGGAGTATGTATTGAAGCCTATTGGAGATGCCGGGCCTGTGATCGATGCTGGCGGGATATTTGAATACGCGCGCAAAACAGGGATGATTGCTGCTCCATCATCTTGAGACCTGATGGGGACTTCCCAAACTGTGGAAAGAAGATGAGTGTAGTGATGATTGTTGCTCCATCAGCTGGAGACCTGATGGGAACTTCCCAAACCGTGAAAAGAAAACGAGTGTAGTAAACTTATCAGCATGTTATTACATTTGAAATCAAAGAACAGTCATTGTCTTTCATGGTTAGTGTCTGGTAAGAAGCAAATATTTTTaATAAAATTTGAAACTCCTTTTGACGAGGACAATATTTGAGAACAAAATTGTTTGTTGGTTTGTTTGATTTTGGAATTTACTGTTCAAGCCTCCGGTTTATTGGACCGTAAAAGTCGTTTAGCTGATTTGTTTTAGTACTCTGTTAGAA

Fln Alignment:

sp_v1.1_unigene22134___RMSMAAINATRSSSVSTNLTHFAANTRSKLAXXXXXXXXXXXXXKNALNLHFSTPRKNRISTFSVRNPPRAIASQSYDAPTEPNKKIFHGKCFVVDDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYAMIGLPARYGRFIEDGQTKTQYSIVIAGANFGCGSSREHXXXXXXXXXXXXXXXXXXXRIFFRNSVATGEIYPLESECRVCDECKTGDIVTVEIEGNKLINHTTGKEYVLKPIGDAGPVIDAGGIFEYARKTGMIAAPSS
A9NMS1_______________RMTTAAINAMKSLSVSTNLMHFPAKTSSKLALPQTQQISRQSLHKNVLNFHLSTPRNNRISTYSVPNPPRAVASQSYDALTEPNKKIFHGKCFVVDDNIDTDQIIPAEYLTLVPSKPDEYEKLGSYAMIGLNAKYGRFIEDDQIKTQYPIVIAGANFGCGSSREHAPVALGAAGVKAVVAEYYARIFFRNSVATGEIYPLESECRVCDECKTGDIVTVEIEGNKLINHTTGKEYVLKPIGDAGPVIDAGGIFEYARRTGMIAAPSS

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
193		20		80	0.995493
194			20	80	0.995493
198			80	20	0.995493
199	80		20		0.995493
208			20	80	0.995493
210	80			20	0.995493
211		10	90		0.991528
213		90	10		0.991528
215		10	80		0.967733
216	20		80		0.999999
217		20		80	0.999999
299	90		10		0.991528
330		66	33		1.0
460	9	90			0.90298
501	14		85		0.994477
505			14	85	0.994477
783		12		87	0.999964
1188		88		11	0.923564
1189		12		87	0.992554
1226	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain