SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22121

Length: 1702 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22121

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent Clp protease proteolytic subunit n=1 Tax=Picea sitchensis RepID=A9NZU9_PICSI	-	-	89%
FL-Next	sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplastic endopeptidase Clp complex	GO:0009840	Cellular Component	0.0	87%
Blast2go	chloroplast thylakoid	GO:0009534	Cellular Component	0.0	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZU9

Fln msg:

Fln protein: MAQAVAVGNTYTSFRLLSSGDLIPKGSSAKSHSTSFRPSLPHRSLSHCRKLRSVCNATNNYYSSSSSIQSEGFWSPESTVSSGIWSIRNDLEVPSSLYCGTYAQGGQGPPPMMQERFQSVITQLFQHRIIRCGGAVDDDMANLIVAQLLYLDATDPNRDIIMYINSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAASMGAFLLSSGTKGKRYSLPNSRIMIHQPLGGGQGQQTDLEIQANEILYHKANLNGYLAYHTGQSIQKIVEDTDRDFFMSAKEAKDYGLIDGVIANPLKALQPLPSPTPSPIAV*

Protein Length: 312

Fln nts: CGTCGTGACCTTCGCCGCAACCCTGCCTCACACTCAATTCGTAATGACCATAAAAGCAACTAAAACTTCTAGTCACTACTCGTTAGAAGAATCGAACCTTGATAAACGGCCTTTAATTCTATAAAAATTGTTCTACCAGTTAGAAGAATCGAACCTTGATAAGCAGCTTTTAATTCTTTTAAAATTGCTCACTGCAGGACTATACTATTTTGTACCAGAATTGTTGAAGATTAGGTTTTATTAGTAGTTAAATGTAGCCTTATGATTTAGCAATCAAGAAGATAAGAATAGCTTGGCTATAAGATTCCGTGTATTTTGTCTCATATAAATGCCTTCAGACTGAAATTTCAATAGGGAAGCAGCTGAGAGCAGATTCTAAGCACAAGCC_-_ATGGCGCAGGCCGTAGCAGTGGGCAATACATACACTTCTTTCAGATTGCTCTCCAGTGGAGATTTAATCCCCAAGGGTTCCTCTGCAAAGTCCCATTCAACTTCCTTCAGGCCGTCTCTGCCACATCGATCCCTTAGTCATTGCAGAAAACTTAGATCAGTTTGCAATGCTACGAACAACTACTATTCTTCCTCCTCCAGCATACAATCAGAAGGTTTTTGGTCTCCAGAGTCCACTGTGTCTAGTGGTATATGGTCAATAAGGAATGATCTGGAGGTACCTTCTTCATTATATTGTGGCACTTATGCCCAAGGGGGACAAGGTCCTCCTCCTATGATGCAGGAACGTTTCCAGAGTGTTATTACCCAGCTTTTTCAACATAGAATAATTCGTTGTGGTGGAGCTGTGGATGATGACATGGCAAATCTCATTGTTGCTCAACTTCTGTATCTTGATGCAACGGATCCCAATAGGGATATTATAATGTACATCAATTCTCCTGGAGGATCAGTTACTGCTGGTATGGCTGTATTTGATACCATGAGGCATATCCGTCCAGATGTTTCTACAGTTTGTGTGGGACTTGCTGCAAGTATGGGCGCCTTTCTACTCAGTTCTGGTACAAAAGGTAAAAGATACAGCTTACCAAACTCCAGGATTATGATTCATCAACCTCTTGGAGGTGGTCAGGGTCAACAGACAGACCTTGAAATTCAGGCAAATGAAATATTGTATCATAAGGCTAATCTGAATGGTTATCTAGCATACCACACGGGGCAGTCCATACAGAAGATTGTTGAAGATACTGATCGGGACTTCTTTATGAGTGCAAAGGAGGCAAAAGACTATGGTCTTATTGATGGTGTCATTGCAAATCCTCTTAAGGCACTTCAACCATTGCCTTCTCCAACTCCTTCTCCAATTGCTGTATGA___TTGGCTGACTTTCATAATACTTTATTTCAATACGTCCATGTCATCGAGACTTTAATGGTTGTCATTATTTCCAGAGGTAGATTTGTTTATATGGTACTATATTATAAAAGAGCTGTTTGATAAGGAATGGTTCAAGTCCAATTTGCATGCATGCCCGCTTCATTTTGGCTCTTCCCCAACGGCTGTATTGAGATATTTGTTCATTTAGTGAAACTAAAATTGATTACGTAACATCATGCAATTCACTGTCCAGTCTAGTATGTTCTATCTAGGTATTGAATGTAATCTGCAAGCTGCAACCCCACACATACCACAGAAAATTTTGCTGGTAGACTTTTCAAGTTTTCCCCACTCTATATTTGCATGCAACATGAGCAATCT

Fln Alignment:

sp_v1.1_unigene22121___GNTYTSFRLLSSGDLIPKGSSAKSHSTSFRPSLPHRSLSHCRKLRSVCNATXXXXXXXXXIQSEGFWSPESTVSSGIWSIRNDLEVPSSLYCGTYAQGGQGPPPMMQERFQSVITQLFQHRIIRCGGAVDDDMANLIVAQLLYLDATDPNRDIIMYINSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAASMGAFLLSSGTKGKRYSLPNSRIMIHQPLGGGQGQQTDLEIQANEILYHKANLNGYLAYHTGQSIQKIVEDTDRDFFMSAKEAKDYGLIDGVIANPLKALQPLPSPTP
A9NZU9_______________GNTCSSFRLLSRGDLIPKSSSAKSHSTPFSLSLPRPPL---RKLRSVCNATNNYYSSSSSIQSEGFFSPESTVSSGIWSIRNDLAVPSSLYCGTYAQGGQGPPPMLQERFQSVISQLFQHRIIRCGGAVDDDMANLIVAQLLYLDAADPNRDIIMYINSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAASMGAFLLSSGTKGKRYSLPNSRIMIHQPLGGGQGQQSDLEIQANEILHHKANLNGYLAYHTGQSIEKIVEDTDRDFFMSAKEAKDYGLIDGVIANPLKALPPLPSPTP

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
73	66	33			0.997452
76		66	33		0.997452
80	66			33	0.997452
81		66	33		0.997452
82			33	66	0.997452
86		33		66	0.997452
89	66	33			0.997452
90	66			33	0.997452
91		33	66		0.997452
241			33	66	1.0
349	33			66	0.997452
351		66	33		0.997452
352	66		33		0.997452
353	66		33		0.997452
354			33	66	0.997452
508		80	20		0.995493
569	33		66		1.0
1091		95		4	0.999988

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain