SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22079

Length: 884 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22079

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GART; glycinamide ribonucleotide transformylase (EC:2.1.2.2)	-	-	2.0e-25	67%
FL-Next	sp=Phosphoribosylglycinamide formyltransferase, chloroplastic; Vigna unguiculata (Cowpea).	-	-	0.0	66%
Blast2go	glycinamide ribonucleotide transformylase	-	-	5.10459e-26	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoribosylglycinamide formyltransferase.	EC:2.1.2.2	-	5.10459e-26	78%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	5.10459e-26	78%
Blast2go	One carbon pool by folate	00670	5.10459e-26	78%
Blast2go	Metabolic pathways	01100	5.10459e-26	78%
Blast2go	Biosynthesis of secondary metabolites	01110	5.10459e-26	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	purine ribonucleotide biosynthetic process	GO:0009152	Biological Process	5.10459e-26	78%
Blast2go	phosphoribosylglycinamide formyltransferase activity	GO:0004644	Molecular Function	5.10459e-26	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	5.10459e-26	78%

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
82	33			66	1.0
83		33		66	1.0
84		33	66		1.0
85	16		33	50	1.0
86		50	33	16	1.0
87			50	50	1.0
89		83	16		0.994512
470	71	19	9		1.0
471		90		9	0.999872
472		9		85	0.999726
473			9	90	0.999872
475			10	90	0.999898
478		80		20	1.0
479	90			10	0.999898
480	90			10	0.999898
481			10	90	0.999898
482			10	90	0.999898
483		10		90	0.999898
487		10		90	0.999898
488	10		90		0.999898
493	10		90		0.999898
507	68	10	21		1.0
512	82	4	13		1.0
515	82		13		1.0
520		4		86	0.999539
546	8		91		0.999807
643		71		28	1.0
659		66		33	1.0
660	53		46		1.0
662	53			46	1.0
781		31		68	1.0
787	80			6	0.999961
788	57		42		1.0
789			21	78	1.0
839		50		50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
376	387	GCT GCT GCT GCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain