SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22041

Length: 923 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22041

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LOB domain protein n=3 Tax=Oryza sativa RepID=Q7XGL4_ORYSJ	-	-	4.0e-37	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	lob domain-containing	-	-	6.96305e-37	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	6.96305e-37	89%
Blast2go	xylem development	GO:0010089	Biological Process	6.96305e-37	89%
Blast2go	nucleus	GO:0005634	Cellular Component	6.96305e-37	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lateral organ boundaries, LOB	IPR004883	-	6.96305e-37	89%

Full-Lengther Next Prediction

SNPs (tot: 62)

Position	A %	C %	G %	T %	Probability
25	40		60		1.0
27			60	40	1.0
28	60	40			1.0
33			60	40	1.0
34			60	40	1.0
35		60	20	20	0.99255
40	60			40	1.0
41		60		40	1.0
43		18	72		0.999994
44	18	18		63	0.999997
199		7		92	0.999602
200			7	92	0.999602
206		7	92		0.999602
209	92			7	0.999602
212	92		7		0.999602
213	92	7			0.999602
217		7	92		0.999602
218	7			92	0.999602
220		92		7	0.999602
221	92	7			0.999602
302		11	88		1.0
303	88		11		1.0
306		88	11		1.0
307			88	11	1.0
309	11			88	1.0
311		11		88	1.0
312	88			11	1.0
322		11		88	1.0
323	4	6	88		0.999992
324		4	88	6	0.999992
325		95		4	0.99692
326	6	93			0.999999
335		2		91	0.993509
438	92		7		0.999602
439		92		7	0.999602
441	92		7		0.999602
444	7		92		0.999602
445		7	92		0.999602
447	92			7	0.999602
448		92		7	0.999602
449	92		8		0.999718
453	92			7	0.999664
454		7	92		0.999664
461	8	91			0.999766
478		89	10		1.0
479	86			10	1.0
481			10	89	1.0
482			89	10	1.0
485		11		88	1.0
486	84		3	11	1.0
490	88			11	1.0
492			84	15	1.0
535	85			9	0.999726
571		7		92	0.999664
575		92		7	0.999664
576		92	7		0.999664
578		8	92		0.999718
583			8	91	0.999766
584		91	8		0.999766
776	27		72		1.0
845	60		40		1.0
850	90			10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain