SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22037

Length: 1690 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene22037

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcriptional factor B3 family protein n=1 Tax=Musa acuminata RepID=Q1EPH8_MUSAC	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	auxin response factor 6 8	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	flower development	GO:0009908	Biological Process	0.0	62%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	0.0	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AUX/IAA protein	IPR003311	-	0.0	62%
Blast2go	Aux/IAA-ARF-dimerisation	IPR011525	-	0.0	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTP3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 419 - 450

Fln protein: SRHCSN*AVHQQLRRAFAVTQSSFQHQQNKQQAFQVPNVVSSFTQLSSSQSHSPLSDISSVTSRPVFTNTGATIASPKSSSSASPLQSILDSLTSEGASTYLSVPRPSQSVVQQPAETWSCVTQDQQVAAPWFSSKRMSTNQIPCLPSGQTEAPLPTGSHRILSQTESKSQTNVPAQSMPLPQFPLRDCSTEQEGVQSDSQSNLLFGVNIDNPTLAIPDTVSSARNVGNGAYVASSFSVTDLMNVPPCAPVSGFSMNSNMGVSGGLDESGFSQPPPNFAKMNAPTRTFTKVYKLGSVGRSVDVTRFRGYPDLRAELDRMFGLEGQLENPRSSWQLVFVDKEKDVLLLGDDPWEEFVNNVRFIKILSPPEVQQMSQEDMEFWSSIPTQQQTSSSSEDCVARNSSRNISSVLTSTGSLEY*

Protein Length: 420

Fln nts: GCAGCAGACATTGCAGCAACTAAGCAGTGCATCAGCAGCTGCGTCGTGCCTTTGCTGTCACTCAGTCATCATTTCAGCATCAACAAAACAAGCAACAGGCATTTCAAGTTCCAAATGTCGTCAGTTCATTCACACAGCTCTCATCATCCCAATCTCACTCTCCATTAAGTGATATTTCTTCTGTGACCTCACGACCAGTCTTTACAAATACTGGTGCTACCATTGCCTCACCTAAGAGCTCATCTAGTGCATCTCCTTTACAAAGCATCTTAGACTCATTGACTTCAGAGGGAGCTTCTACGTATTTAAGTGTGCCCCGGCCAAGTCAATCTGTTGTGCAGCAACCTGCTGAAACTTGGTCTTGCGTTACTCAGGATCAGCAAGTTGCTGCACCATGGTTTTCTTCCAAAAGAATGTCAACTAATCAAATTCCTTGTCTACCATCTGGTCAGACTGAAGCCCCTCTTCCTACTGGTAGTCATCGTATCCTGTCCCAAACTGAATCTAAAAGTCAGACTAATGTTCCAGCCCAATCAATGCCACTGCCTCAATTTCCTTTAAGAGATTGTTCTACAGAACAGGAAGGAGTTCAGTCTGATTCCCAGAGCAATCTTCTTTTTGGTGTTAATATTGATAACCCAACTTTGGCTATTCCTGATACAGTTTCTAGTGCAAGGAATGTGGGCAATGGTGCTTATGTAGCCAGTTCATTTTCTGTTACGGACTTAATGAATGTGCCTCCTTGTGCTCCTGTCTCTGGGTTCTCTATGAATTCTAACATGGGTGTGTCTGGAGGTCTAGATGAAAGTGGGTTTTCACAGCCTCCACCAAATTTTGCAAAGATGAATGCTCCCACGAGAACATTCACTAAGGTTTACAAGCTAGGTTCTGTTGGAAGGTCAGTGGATGTAACACGTTTCAGGGGCTATCCAGATCTGCGTGCCGAGCTTGACCGTATGTTTGGTCTAGAAGGCCAGCTGGAGAACCCAAGATCAAGCTGGCAGCTTGTATTTGTTGACAAGGAGAAGGATGTTCTTCTCCTTGGGGATGATCCTTGGGAGGAGTTTGTCAATAATGTTCGATTTATTAAGATACTCTCTCCTCCAGAAGTGCAGCAGATGAGTCAGGAAGATATGGAGTTTTGGAGTTCCATTCCAACTCAGCAGCAGACAAGCAGTAGTTCAGAAGACTGTGTAGCTAGAAATTCTTCTCGCAACATCAGTTCAGTTCTCACATCGACTGGATCACTGGAGTATTAA___GTGTAGTTCAATTGTACTATATCACCAGTTGTGTTGTGTCTTTAAAGGGGGGTCGTAAAAAATGAGATGTACTTCAATTCATAACTCTTAGGTATGCCCCATAACATGTTTGTCCAGGATATCTAAATGATGAAGTGGTATTTAGCGTCATTTTCTTTGATTGAAGTTGATAACTTGCTGCATTGTTCTAGAACCGTATTTGAAAAATATTGCCTTGTATCTCTGTTTATACTCTCGTTTTATCTTTTGTTGCAAGAATGAATAATGTTTTACTCCTGAAATAACTATGATGTTTGGTGTGCTAGTAAACATGCTTTTCTAGGCAATTCTCTGATAAAATTTTAGTTCATATTGCTGGTTTTTAGTAAATTAACATTGTTGTAATTGGAGTTTGCGACTTTGAGAACTTTAGAATAATATATAAATGTGGG

Fln Alignment:

sp_v1.1_unigene22037___TRTFTKVYKLGS-VGRSVDVTRFRGYPDLRAELDRMFGLEGQLENPRSSWQLVFVDKEKDVLLLGDDPWEEFVNNVRFIKILSPPEVQQMSQE
C0PTP3_______________TRSCTKVHKQGSALGRAVDLTKFEGYTELIRELEQMFNIEGELEDPNKGWQVVYTDNEGDMMLVGDDPWQEFCSIVRKIYIYTREEVEKMTPQ

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
648	75		25		0.996473
870	54		45		1.0
1551		12		87	0.992554
1595	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain