SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22026

Length: 2846 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22026
CGTCGTGACCTTGGCTGTCACTCAAGCTCTTCCTTGCCCGACGAAACCATCGAGAGGACACAAACTCGGCTCGTCCGCTGCGGCAGCCAAAGAGAGGGATCTAGAACATCGACGTGGCAAAAATCTGCCCGGCTAAAGCCTCCAAGGCTTCTCTTTTTCTTATCGTGCCTCACTACCATATTCTGTCATTTTATTTGTCTCCGAGGGCTTGGGTTTCTCAGAGTTCACATCTTCGGCATCGATCGTGGAAAAAACCCCATAATCCCAATACTCTCATTTTATCCACAGTCAATCTCTCCCCAAGGGTTTCAGTTCAGAGATTTCATCCATGGCGGCTGCGGCTCATGTTCATTTGTTCGCAGCTGGCATACCTCATACCAACACCGGTTCTTCCAGAAGATCCAGCCGTGGAAATCGAAATAGCGCCTTCTTTGGCCTCGGTCTGGGTAAAAATCCCGTCTTCAATGGTGGATTTGGCAGCTTGCGCAGCAAGCAGCAGCAGCAATCCAGAAGGCGGGCCGCGGGGCCTCTGAGGGTTGTCTGTGAGAAGGTCGTTGGAATCGATTTGGGGACTACGAATTCGGCCGTGGCGGCCATGGAAGGAGGTAAGCCCACCATCATCACTAATGCTGAGGGCCAGCGAACGACTCCCTCTGTGGTTGCTTACTCCAAGAACGGGGACCGTCTCGTCGGGCAAATTGCGAAGCGGCAGGCCGTGGTGAACCCTGAGAACACCTTTTTCTCCGTGAAGAGGTTCATTGGGAGAAAGATGTCAGAGGTGTCCGAGGAGTCGAAGCAGGTCTCCTATCGCGTTATCCGTGACGACAATGGTAATGTCAAGCTCGATTGTCCTGCAATTGGTAAACAATTCGCGGCCGAAGAGATTTCTGCGCAGGTTTTGAGAAAGCTCGTTGATGATGCCACCAAGTTTTTAAATGATAAGGTCAACAAGGCTGTGATAACTGTTCCTGCATATTTCAACGATTCTCAGAGAACAGCCACAAAGGATGCAGGCCGGATTGCTGGCTTGGAAGTCCTGAGAATTATCAATGAACCCACTGCTGCTTCATTGGCCTATGGGTTCGAGAAGAAGAATAATGAAACAATACTTGTGTTTGATCTTGGTGGTGGGACATTTGATGTCTCAGTGCTTGAGGTTGGAGATGGTGTATTTGAGGTGCTTTCCACTTCAGGTGACACACATCTGGGAGGAGATGACTTCGATAAGAGAATTGTTGATTGGCTGGCCTCCAGCTTTAAGAAAGATGAGGGAATCGACTTGTTGAAAGACAAACAAGCTCTTCAACGTCTAACTGAAACCGCTGAGAAAGCTAAGATTGAATTGTCATCACTTACCCAAACAAGCATCAGTTTGCCATTCATAACAGCCACTGCAGATGGGCCCAAGCATATTGAGACAACCCTTACACGGGTCAAATTTGAAGAGCTGTGCTCTGATTTGCTTGACAGGCTGAAGACTCCTGTCGAGAATGCATTGAGAGATGCCAAGTTGTCTTATAAGGACTTGGATGAAATTATTTTGGTTGGTGGGTCTACTAGAATTCCCGCTGTTCAGGATCTGGTCAAGAGAGTGACCAACAAAGAGCCAAATGTCACTGTCAACCCAGATGAGGTTGTAGCTCTAGGGGCAGCAGTCCAGGCTGGAGTGCTAGCGGGTGATGTTAGCGACATCGTGCTTCTTGATGTTACTCCGCTGTCACTTGGGCTGGAAACTCTTGGTGGTGTAATGACGAAAATCATTCCTCGGAACACTACACTACCAACCTCAAAATCTGAGGTGTTTTCTACGGCTGCTGATGGTCAGACAAGTGTTGAAATTAATGTTCTGCAAGGTGAACGAGAATTTGTCAAGGACAACAAGTCGCTCGGGAGTTTTCGGTTGGATGGAATTCCTCCTGCTCCACGAGGTGTACCTCAAATAGAGGTGAAGTTTGATATTGATGCAAACGGTATTCTTTCAGTCGCTGCTGTGGACAAAGGCACTCAAAAGAAGCAGGATATAACAATTACCGGTGCTAGCACCTTGCCAACTGATGAGGTTGAAAAAATGGTGAAAGAGGCTGAGAGATTTTCTAAAGAAGACAAAGAGAAGAGAGAAGCTATTGATACAAAGAATCAAGCTGATTCTGTCGTCTATCAGACTGAGAAGCAGTTGAAGGAACTTGGTGATAAGGTACCCGCAGAAGTCAAGGACAAGGTGGAAGCTAAGCTGAAAGAACTTAAAGATGCAATTGCCAGTGGGTCAACGCAGTCAATGAAGGATACGATGGCAGCTCTCAACCAAGAAGTGATGCAGTTAGGGCAATCTCTTTACAACCAGCCTGGAGCTGCTGGCGGACCAACCGCTGGCGGGGAAGCAGGGTCTGGTAGTACTGGAGGAAAAACATCTGGGGGTGATGATGTTATAGATGCTGATTTTACAGACAGCAACTAAACCCACTATAATGGGTTACTTGATTTCTTGGAATAATTTTCATTCTAGTTTCAGAGTTGGCCCGTAGAGAACATGTTTAGTTGTGAATGGAGCTTTTTGTGATAGAACATTTTACCTCTAGCATTTGAAATACGTCTTATGTTTTGTAGATAAAATTTATCACTCCATTCAAAAGGTGTTTCAATCGGGGACAGAGCAGAATACCGCCAACAAGATGTTTGTTTCACGGTTCTCATCTTTTTACCCGCAAGAAATATATAGTGGGATGTACCTTGAGTTCTTTAATGAATTTTAAATAATCAATGCTCACAAATTTTTGTAATTAAATTGTTACAACTTCGTTGCAACTATTAATCATCATATAATAGTGTTCCTCTGGCCAATTTCATTT

Ace file of the UniGene sp_v1.1_unigene22026

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	heat shock protein, putative (EC:1.3.1.74)	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	93%
Blast2go	response to heat	GO:0009408	Biological Process	93%
Blast2go	metabolic process	GO:0008152	Biological Process	93%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	93%
Blast2go	ATP binding	GO:0005524	Molecular Function	93%
Blast2go	mitochondrion	GO:0005739	Cellular Component	93%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	93%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	93%
Blast2go	nucleus	GO:0005634	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein Hsp70	IPR001023	-	93%
Blast2go	Chaperone DnaK	IPR012725	-	93%
Blast2go	Heat shock protein 70	IPR013126	-	93%
Blast2go	Heat shock protein 70, conserved site	IPR018181	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLU0

Fln msg:

Fln protein: MAAAAHVHLFAAGIPHTNTGSSRRSSRGNRNSAFFGLGLGKNPVFNGGFGSLRSKQQQQSRRRAAGPLRVVCEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYSKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVSEESKQVSYRVIRDDNGNVKLDCPAIGKQFAAEEISAQVLRKLVDDATKFLNDKVNKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASSFKKDEGIDLLKDKQALQRLTETAEKAKIELSSLTQTSISLPFITATADGPKHIETTLTRVKFEELCSDLLDRLKTPVENALRDAKLSYKDLDEIILVGGSTRIPAVQDLVKRVTNKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVKDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVAAVDKGTQKKQDITITGASTLPTDEVEKMVKEAERFSKEDKEKREAIDTKNQADSVVYQTEKQLKELGDKVPAEVKDKVEAKLKELKDAIASGSTQSMKDTMAALNQEVMQLGQSLYNQPGAAGGPTAGGEAGSGSTGGKTSGGDDVIDADFTDSN*

Protein Length: 710

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCTCTTCCTTGCCCGACGAAACCATCGAGAGGACACAAACTCGGCTCGTCCGCTGCGGCAGCCAAAGAGAGGGATCTAGAACATCGACGTGGCAAAAATCTGCCCGGCTAAAGCCTCCAAGGCTTCTCTTTTTCTTATCGTGCCTCACTACCATATTCTGTCATTTTATTTGTCTCCGAGGGCTTGGGTTTCTCAGAGTTCACATCTTCGGCATCGATCGTGGAAAAAACCCCATAATCCCAATACTCTCATTTTATCCACAGTCAATCTCTCCCCAAGGGTTTCAGTTCAGAGATTTCATCC_-_ATGGCGGCTGCGGCTCATGTTCATTTGTTCGCAGCTGGCATACCTCATACCAACACCGGTTCTTCCAGAAGATCCAGCCGTGGAAATCGAAATAGCGCCTTCTTTGGCCTCGGTCTGGGTAAAAATCCCGTCTTCAATGGTGGATTTGGCAGCTTGCGCAGCAAGCAGCAGCAGCAATCCAGAAGGCGGGCCGCGGGGCCTCTGAGGGTTGTCTGTGAGAAGGTCGTTGGAATCGATTTGGGGACTACGAATTCGGCCGTGGCGGCCATGGAAGGAGGTAAGCCCACCATCATCACTAATGCTGAGGGCCAGCGAACGACTCCCTCTGTGGTTGCTTACTCCAAGAACGGGGACCGTCTCGTCGGGCAAATTGCGAAGCGGCAGGCCGTGGTGAACCCTGAGAACACCTTTTTCTCCGTGAAGAGGTTCATTGGGAGAAAGATGTCAGAGGTGTCCGAGGAGTCGAAGCAGGTCTCCTATCGCGTTATCCGTGACGACAATGGTAATGTCAAGCTCGATTGTCCTGCAATTGGTAAACAATTCGCGGCCGAAGAGATTTCTGCGCAGGTTTTGAGAAAGCTCGTTGATGATGCCACCAAGTTTTTAAATGATAAGGTCAACAAGGCTGTGATAACTGTTCCTGCATATTTCAACGATTCTCAGAGAACAGCCACAAAGGATGCAGGCCGGATTGCTGGCTTGGAAGTCCTGAGAATTATCAATGAACCCACTGCTGCTTCATTGGCCTATGGGTTCGAGAAGAAGAATAATGAAACAATACTTGTGTTTGATCTTGGTGGTGGGACATTTGATGTCTCAGTGCTTGAGGTTGGAGATGGTGTATTTGAGGTGCTTTCCACTTCAGGTGACACACATCTGGGAGGAGATGACTTCGATAAGAGAATTGTTGATTGGCTGGCCTCCAGCTTTAAGAAAGATGAGGGAATCGACTTGTTGAAAGACAAACAAGCTCTTCAACGTCTAACTGAAACCGCTGAGAAAGCTAAGATTGAATTGTCATCACTTACCCAAACAAGCATCAGTTTGCCATTCATAACAGCCACTGCAGATGGGCCCAAGCATATTGAGACAACCCTTACACGGGTCAAATTTGAAGAGCTGTGCTCTGATTTGCTTGACAGGCTGAAGACTCCTGTCGAGAATGCATTGAGAGATGCCAAGTTGTCTTATAAGGACTTGGATGAAATTATTTTGGTTGGTGGGTCTACTAGAATTCCCGCTGTTCAGGATCTGGTCAAGAGAGTGACCAACAAAGAGCCAAATGTCACTGTCAACCCAGATGAGGTTGTAGCTCTAGGGGCAGCAGTCCAGGCTGGAGTGCTAGCGGGTGATGTTAGCGACATCGTGCTTCTTGATGTTACTCCGCTGTCACTTGGGCTGGAAACTCTTGGTGGTGTAATGACGAAAATCATTCCTCGGAACACTACACTACCAACCTCAAAATCTGAGGTGTTTTCTACGGCTGCTGATGGTCAGACAAGTGTTGAAATTAATGTTCTGCAAGGTGAACGAGAATTTGTCAAGGACAACAAGTCGCTCGGGAGTTTTCGGTTGGATGGAATTCCTCCTGCTCCACGAGGTGTACCTCAAATAGAGGTGAAGTTTGATATTGATGCAAACGGTATTCTTTCAGTCGCTGCTGTGGACAAAGGCACTCAAAAGAAGCAGGATATAACAATTACCGGTGCTAGCACCTTGCCAACTGATGAGGTTGAAAAAATGGTGAAAGAGGCTGAGAGATTTTCTAAAGAAGACAAAGAGAAGAGAGAAGCTATTGATACAAAGAATCAAGCTGATTCTGTCGTCTATCAGACTGAGAAGCAGTTGAAGGAACTTGGTGATAAGGTACCCGCAGAAGTCAAGGACAAGGTGGAAGCTAAGCTGAAAGAACTTAAAGATGCAATTGCCAGTGGGTCAACGCAGTCAATGAAGGATACGATGGCAGCTCTCAACCAAGAAGTGATGCAGTTAGGGCAATCTCTTTACAACCAGCCTGGAGCTGCTGGCGGACCAACCGCTGGCGGGGAAGCAGGGTCTGGTAGTACTGGAGGAAAAACATCTGGGGGTGATGATGTTATAGATGCTGATTTTACAGACAGCAACTAA___ACCCACTATAATGGGTTACTTGATTTCTTGGAATAATTTTCATTCTAGTTTCAGAGTTGGCCCGTAGAGAACATGTTTAGTTGTGAATGGAGCTTTTTGTGATAGAACATTTTACCTCTAGCATTTGAAATACGTCTTATGTTTTGTAGATAAAATTTATCACTCCATTCAAAAGGTGTTTCAATCGGGGACAGAGCAGAATACCGCCAACAAGATGTTTGTTTCACGGTTCTCATCTTTTTACCCGCAAGAAATATATAGTGGGATGTACCTTGAGTTCTTTAATGAATTTTAAATAATCAATGCTCACAAATTTTTGTAATTAAATTGTTACAACTTCGTTGCAACTATTAATCATCATATAATAGTGTTCCTCTGGCCAATTTCATTT

Fln Alignment:

sp_v1.1_unigene22026___GIPHTNTXXXXXXXXXXXXXAFFGLGLGKNPVFNGGFGSLXXXXXXXXXXXAAGPLRVVCEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYSKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVSEESKQVSYRVIRDDNGNVKLDCPAIGKQFAAEEISAQVLRKLVDDATKFLNDKVNKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASSFKKDEGIDLLKDKQALQRLTETAEKAKIELSSLTQTSISLPFITATADGPKHIETTLTRVKFEELCSDLLDRLKTPVENALRDAKLSYKDLDEIILVGGSTRIPAVQDLVKRVTNKEPNVTVNPDEXXXXXXXXXXXXXXXXXSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVKDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVAAVDKGTQKKQDITITGASTLPTDEVEKMVKEAERFSKEDKEKREAIDTKNQADSVVYQTEKQLKELGDKVPAEVKDKVEAKLKELKDAIASGSTQSMKDTMAALNQEVMQLGQSLYNQPXXXXXXXXXXXXXXXXXXXXXXXXDDVIDADFTDSN
B8LLU0_______________GIPHTHTSSSRKPSRGNRNSAFFGLGLGKNPVFNGGFGSLRSKQPQQSRRRAAGPLRVVCEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYSKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVSEESKQVSYRVIRDDNGNVKLDCPAIGKQFAAEEISAQVLRKLVDDATKFLNDKVNKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASSFKKDEGIDLLKDKQALQRLTETAEKAKIELSSLTQTSISLPFITATADGPKHIETTLTRVKFEELCSDLLDRLKTPVENSLRDAKLSYKDLDEIILVGGSTRIPAVQDLVKRVTNKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVKDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVAAVDKGTAKKQDITITGASTLPTDEVEKMVKEAERFSKEDKEKREAIDTKNQADSVVYQTEKQLKELGEKVPAEVKDKVEAKLKELKDAIASGSTQSMKDTMAALNQEVMQLGQSLYNQPGPAGGPTAGGEAGPGSPGGKTPGGDDVIDADFTDSN

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
179	14	85			0.993533
182	57			42	1.0
183			42	57	1.0
184			42	57	1.0
189		85	14		0.993533
191		28		71	1.0
193		14		71	0.984337
194	14	14		71	0.984337
289	88	11			0.923564
293	88		11		0.923564
295		11		88	0.923564
298		88	11		0.923564
299			11	88	0.923564
301		88		11	0.923564
302		88	11		0.923564
303		88		11	0.923564
304	77	11			0.968132
306			88	11	0.923564
307		11	88		0.923564
308	11		88		0.923564
424	85			14	0.993533
425			85	14	0.993533
429	14	85			0.993533
430			14	85	0.993533
432		85	14		0.993533
433	16			66	0.988813
434			16	83	0.994512
437	16		83		0.994512
441	16	83			0.994512
444		16		83	0.994512
2837		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
492	504	AGC AGC AGC AGC A	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain