SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene22009

Length: 2113 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene22009
ATTGGGGACGCTGGTGCGCAGCAACCTCGAATTTTATTCGGATATATGGTAGCATATTCTTGTTCATGGTATCTTTATTTTCGAGATATGTCCACCCCATCGCAAAGGAAGGGTTTTCAACGACGCTGTCGAGGGTTTGAAGTTTGGTCTGTATACATAAGAGTATAATTCTATCTCTGGCCAGTTGTATAAGATATTGGACTCGCCAGAAGAAGTAATTAGCGAATGTGTTTCAAATTACTGTACTCCTGCGGAGGTGTGGAGAAGCAGCTTTGGAGGAAAACTTATACATCGAGCTGTTTCTCGTGGATCACAGCAGTATTTTAGTTTATTCCACGGAAGTCTAGAATTATAAAAGATAAACAAGATAAATCATGAAGTTTGGTAAGCGTCTGCAGATCCAGATCGACGAAACTCTTCCCGAGTGGCGTGATAAATTTCTGTCATACAAGCCTCTCAAAAAGCGACTAAAACAGGTCGCGGGCCCAGAGTGGTTTACAGCTGTTGGATTTTGTGCAGCTAGTCCTCAACATGATGGAAGCTCGTCATCTGTGGTAGACAAATTTATCCAAGAGCTCAGAAAAGGTAGTGCTGCCCTTGGTGAGATTGTAGATAAACCAGCAAATGAGAGTGCAGCTGAAGCAGCTAGCTCGAAGCCTGCTTCAGAAATTGGTGCAGGAATCAATGATGAAGTGTCAAGTGAGTCTAGCACCCATGCCCCTGCAGAAAGGAACTCTGAAAGAAAGACAGGAAATTTTGATGAGGAAGATTTTATTAATCTTATAAATGAGGAGCTTGAGAAATTTAATAACTTCTTCTTAGAAAAGGAGGAGGAGTATGTGATTCATCTCCAGGAGCTAAAAGAAAGGATTGAAAGATTGAAAGAACGTAGCAGCAGACAAAATGGAACATACACCTCAGAGTATGAATTCAATGAAGAAACAGTGAAGATCCGTAGAGACATTGTTGCCATCCATGGGGAGATGGTACTGCTTGAGAACTATAGTTCTCTCAATTTTATAGGTTTGGTGAAAATTTTGAAAAAATATGACAAAAGAACGGGTGCATTGTTACGTTTGCCTTTCACCCAAAGTGTTCTTCAGCAACCATTCTTCACCACTGAACTGCTTTCAAAGCTTGTTCGTGAATGTGAGGCTAACCTTCAGAGCATCTTTCCCTCCATTCCCGTAGATGAAAGGGGGGATTGTGCTACTGACCAGTCCAGGGATGAAAACAATGAAGCAAATGCACAGGAAACCTTGTCACTTCAAGGAGACACTGGCATCTACAGAAGTACTCTTGCGGCTTTGAGAACCATTCAGGATCTCCGGAAGGGTAGCTCTACATATAATCCCTTATCTTTTGCGCCCTTTGTTCCAGGTGATATTGAGGATGGCTTGGTTGCTGGTGGCAACGATAAGTCAAAGTCAAATTCTTCACATTCCAAGACCAATGGAAATGCACAGAATGAGGAAAATGTTACGTCAACCACTAGAGTGAATATGGTGCAGCCCTCTCTTGAAACAAATGAGGGTTTTACTTCCAGTGAACAGGAAGAAGTGGCTGTTCCTTGAAGGAAAGGAGAATTTTGTTTTTCAGCAGAATGTGAAAGCACTGATTTACTCTTAATTTATGGATTTCCTCCGCATATGAGAAGGCAAACTGATTTTTATGCAGATTGTTGTGCCAGAACTTCACCAAATTACTGGCAGTTGATAACAATACTACAGCAGCATCTGTATCAGATAGTGGTGATTGGTTAGATATATTTGTTTTGTATACATGTCGAGCATATCTCCTGAGTCCTGACTGCAAAATGTCGATGCTGACGCTAGTCTAAACTGAAGCTGAAAGGCATTGCAAACTAATTATTGGTATTCCAATTCTGTTTAAAATTTGAACTTAACTGCCTGCAACATCATCTTATGTAATTTTCTTTATTGTGACCGCTCAAGAATAAGCTTAACCATAAAATCTTACCGAGATGGACACTGCAATGCGAGTTCTTCGCTGTTGAATACATCTCCTGTATAGTGTTTCCCCCATTTGCTGCTTTACATAAACTTCTCATAAAATGGAGCGGATAACTCTTTTGAGAAAAATTTCACTGGGT

Ace file of the UniGene sp_v1.1_unigene22009

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SPX domain-containing protein 4 n=2 Tax=Arabidopsis RepID=SPX4_ARATH	-	-	2.94273e-44	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	xenotropic and polytropic murine leukemia virus receptor ids-	-	-	4.90454e-44	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	4.90454e-44	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	SPX, N-terminal	IPR004331	-	4.90454e-44	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNU0

Fln msg: your sequence is longer than subject: 400 - 238

Fln protein: MKFGKRLQIQIDETLPEWRDKFLSYKPLKKRLKQVAGPEWFTAVGFCAASPQHDGSSSSVVDKFIQELRKGSAALGEIVDKPANESAAEAASSKPASEIGAGINDEVSSESSTHAPAERNSERKTGNFDEEDFINLINEELEKFNNFFLEKEEEYVIHLQELKERIERLKERSSRQNGTYTSEYEFNEETVKIRRDIVAIHGEMVLLENYSSLNFIGLVKILKKYDKRTGALLRLPFTQSVLQQPFFTTELLSKLVRECEANLQSIFPSIPVDERGDCATDQSRDENNEANAQETLSLQGDTGIYRSTLAALRTIQDLRKGSSTYNPLSFAPFVPGDIEDGLVAGGNDKSKSNSSHSKTNGNAQNEENVTSTTRVNMVQPSLETNEGFTSSEQEEVAVP*

Protein Length: 401

Fln nts: ATTGGGGACGCTGGTGCGCAGCAACCTCGAATTTTATTCGGATATATGGTAGCATATTCTTGTTCATGGTATCTTTATTTTCGAGATATGTCCACCCCATCGCAAAGGAAGGGTTTTCAACGACGCTGTCGAGGGTTTGAAGTTTGGTCTGTATACATAAGAGTATAATTCTATCTCTGGCCAGTTGTATAAGATATTGGACTCGCCAGAAGAAGTAATTAGCGAATGTGTTTCAAATTACTGTACTCCTGCGGAGGTGTGGAGAAGCAGCTTTGGAGGAAAACTTATACATCGAGCTGTTTCTCGTGGATCACAGCAGTATTTTAGTTTATTCCACGGAAGTCTAGAATTATAAAAGATAAACAAGATAAATC_-_ATGAAGTTTGGTAAGCGTCTGCAGATCCAGATCGACGAAACTCTTCCCGAGTGGCGTGATAAATTTCTGTCATACAAGCCTCTCAAAAAGCGACTAAAACAGGTCGCGGGCCCAGAGTGGTTTACAGCTGTTGGATTTTGTGCAGCTAGTCCTCAACATGATGGAAGCTCGTCATCTGTGGTAGACAAATTTATCCAAGAGCTCAGAAAAGGTAGTGCTGCCCTTGGTGAGATTGTAGATAAACCAGCAAATGAGAGTGCAGCTGAAGCAGCTAGCTCGAAGCCTGCTTCAGAAATTGGTGCAGGAATCAATGATGAAGTGTCAAGTGAGTCTAGCACCCATGCCCCTGCAGAAAGGAACTCTGAAAGAAAGACAGGAAATTTTGATGAGGAAGATTTTATTAATCTTATAAATGAGGAGCTTGAGAAATTTAATAACTTCTTCTTAGAAAAGGAGGAGGAGTATGTGATTCATCTCCAGGAGCTAAAAGAAAGGATTGAAAGATTGAAAGAACGTAGCAGCAGACAAAATGGAACATACACCTCAGAGTATGAATTCAATGAAGAAACAGTGAAGATCCGTAGAGACATTGTTGCCATCCATGGGGAGATGGTACTGCTTGAGAACTATAGTTCTCTCAATTTTATAGGTTTGGTGAAAATTTTGAAAAAATATGACAAAAGAACGGGTGCATTGTTACGTTTGCCTTTCACCCAAAGTGTTCTTCAGCAACCATTCTTCACCACTGAACTGCTTTCAAAGCTTGTTCGTGAATGTGAGGCTAACCTTCAGAGCATCTTTCCCTCCATTCCCGTAGATGAAAGGGGGGATTGTGCTACTGACCAGTCCAGGGATGAAAACAATGAAGCAAATGCACAGGAAACCTTGTCACTTCAAGGAGACACTGGCATCTACAGAAGTACTCTTGCGGCTTTGAGAACCATTCAGGATCTCCGGAAGGGTAGCTCTACATATAATCCCTTATCTTTTGCGCCCTTTGTTCCAGGTGATATTGAGGATGGCTTGGTTGCTGGTGGCAACGATAAGTCAAAGTCAAATTCTTCACATTCCAAGACCAATGGAAATGCACAGAATGAGGAAAATGTTACGTCAACCACTAGAGTGAATATGGTGCAGCCCTCTCTTGAAACAAATGAGGGTTTTACTTCCAGTGAACAGGAAGAAGTGGCTGTTCCTTGA___AGGAAAGGAGAATTTTGTTTTTCAGCAGAATGTGAAAGCACTGATTTACTCTTAATTTATGGATTTCCTCCGCATATGAGAAGGCAAACTGATTTTTATGCAGATTGTTGTGCCAGAACTTCACCAAATTACTGGCAGTTGATAACAATACTACAGCAGCATCTGTATCAGATAGTGGTGATTGGTTAGATATATTTGTTTTGTATACATGTCGAGCATATCTCCTGAGTCCTGACTGCAAAATGTCGATGCTGACGCTAGTCTAAACTGAAGCTGAAAGGCATTGCAAACTAATTATTGGTATTCCAATTCTGTTTAAAATTTGAACTTAACTGCCTGCAACATCATCTTATGTAATTTTCTTTATTGTGACCGCTCAAGAATAAGCTTAACCATAAAATCTTACCGAGATGGACACTGCAATGCGAGTTCTTCGCTGTTGAATACATCTCCTGTATAGTGTTTCCCCCATTTGCTGCTTTACATAAACTTCTCATAAAATGGAGCGGATAACTCTTTTGAGAAAAATTTCACTGGGT

Fln Alignment:

sp_v1.1_unigene22009___QNGTYTSEYEFNEETVKIRRDIVAIHGEMVLLENYSSLNFIGLVKILKKYDKRTGALLRLPFTQSVLQQPFFTTELLSKLVRECEANLQSIFPSIP------------------------------VDERGDCATDQSR--DENN----EANAQETLSLQGDTGIYRSTLAALRTIQDLRKGSSTYNPLSFAP
B8LNU0_______________QNATVFSQTEYNEEMIKLRKDIVNFHGEMVLLENYSALNYTGLAKILKKYDKRTGGLLRHPFIQKVLQQPFFTTEQLSKLISECENTLQSLFPDYPKSLLQVPAGPSSNGNQAEASSSAGNSDLQRLREPPPAATTQAEFGEENSPLKGKGDEDGDRDAEGMESIYRSTMAALRTMREIRRGSSTYSVFSLPP

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
203		85		14	0.993533
548		66	33		0.997452
550		33		66	0.997452
556			66	33	0.997452
557		33		66	0.997452
559		33	66		0.997452
560	66			33	0.997452
1576	12			87	0.992554
1736	90		10		0.90298
1743		10		90	0.90298
1745	90			10	0.90298
1747	90		10		0.90298
1748		10		90	0.90298
1749	90			10	0.90298
1752	10		90		0.90298
1753		10	90		0.90298
1755		10	90		0.90298
1758			11	88	0.923564
1817	14		85		0.993533
1858	90	10			0.90298
1863	88			11	0.923564
1864	88	11			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain