SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21999

Length: 2525 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21999
CGTCGTGACCTTGGCTGTCACTCAATATACGTCGTGACCTTGGCTGTCACTCAATATTTTACATTTACATCGCATTGAACGGCCTCCCTCACAGATCCAACCTACTGCTACATCGGTCGGCGTGGTTGCTTCAATCAAATCCCATTTCATCTGCCGTCCGTCTGTTCGTTCTTAAAGCCCAGGGTTTCAGGGCCGCGCGGGGTTCGAACCGTCCACCGCTGCTGTTTTCGAACCTTTAACAGATTTTGCAATAACCTCCCGTGAGTTTGGGAGGGGGGTTAGGTGAGTGAAGGAAGGAAGGGATGGGAGGAGAAGGAGATCATCCACAGCAGAGCGCGGCTTCAGAGGAGGCAAACGGACTCGGAAATGCTTCTGCCGCGGCAATCATTCACATTCGGTGCACCAATGGATCGAAGTTTAGCGTCGAGACAGACTTGGAAGCAAAGGTGGGGGCCTTCAAAGTGCTCTTGGCCGAGAAATGCGATATTCCCGCAGACCAACAGCGATTGATTTACAAGGGTCGGATTCTCAAGGATGATAATTCTCTTCACAGCTACGGTCTGCAAAGTGATCACACTGTCCATCTGGTCCGTGGTGCATCAACCTCTGGATCTGCCAATGTTTCTGCTGCAGAAAATACTGTGTCTCCAAATAGTATGCCAGCACAACCTGTGCAAGGAGTGCCATCGAATAACAATGGAGGATTTGGTGGATCAGGTCTAGGAGGCTTACTCTTCCCTGGGCTTGGTGGAAATGGATTGGGTGGAGATGGCTTGGGTGGAGATGGCCTGGGTGGGAACAATCCAACAGGTTTGTTTGGTGCAGGACTTCCTGAGTTGCAACAGGTTCAGCAACAACTTACACAGAACCCCAACATGATTCGTGAAATGATGAATATGCCTGCCATTCAGAACCTTATGAACAACCCCGATTTGATGCGAAACTTGATTATGAGTAATCCGCAGATGCGGGAAATTATTGACAGGAACCCAGACCTTGCGCACATACTCAATGATCCTGGCACTCTTAGACAGACGTTGGATGCAGCAAGGAATCCTGAACTCATGCGAGAGATGATGAGAAATACTGACAGGGCCATGAGCAACATTGAATCATCTCCTGAAGGCTTTAACATGCTCCGTCGTATGTATGAAACAGTTCAAGAGCCATTTCTCAATGCGACAACAATGGGAGGCGACAATGGGAATGACTTGGGCTCTAATCCTTTTGCTGCTCTGTTTGGACAAGGGCCAGGCCAGGCTAGAGCCCAAACAACAAATCCTTCAACCACTGCATCTGATGCAACTGGCTCACCTGCTCCAAATACAAATCCCCTTCCCAATCCATGGAATCCTTCATCAAACACTCCAGGGACAGGAGCTCCTGGTGCCCAGACAGGAGCAAGGACTGCCCCAATGCCTGGTTCAAGGCAGACAGGCATTGGGGGAGTACCAGGTGCTGCTTTGCCAGACTTTGCTGGGATGGGTGGTGCATTGTTCGAGCCTGCTGTTATGCAACAGATGCTACAAAATCCTGCTGTTATTCAAATGATGCAAGGACTACTTTCAAATCCTCAATATATGAATCAGTTTCGTCCAATGTTAGAGAACAATTCTCAATTTAGAGAAATGATGCAAAGTCCAGAATTTCTTAGGCAGCTAACAAGTCCAGAGAGCATGCAGCAACTGCTATCATTGCAGCAATCTCTCATGTCTCAGTTACCTCGACAGATGGGAGGCCAGGCACAGGGTCAAACTGGTTCAACTGGAAGCAACAACTTGGGATTGGAGGCTCTGTTGGGAATGTTTGGAGGGTTGGGCAGTGGAGACACACAAAGTGCATCTAATGTGCCAGCAGAGCAACTTTATGCAACACAATTAGTGCAGCTACAAGAAATGGGGTTCTATGACACACAGGAGAACATCCGTGCATTAACTGCAACTGGTGGAAATGTCCATGCAGCTGTTGAGCGTTTACTTGGCAATCTTGGCTAGGCAATTCAGCAATGTATTTTTTCATATATCCACTTATTTTACACTCTGGTCATCTAAACTGTTTTCCTTTTTTTTGTTCGATTAGAAGGTTAAGTTGAAGCATTCTTGAACTGCATTTTTAAAATTTAGAGGTGGAATAATAAGGCAAGTTTTGGCAGGTGCAAACAATTGTGTTTGCTGACTTACGTGAACTACAAGTGTTTGGCTTCCATGGAGAGCTTAAACAGGCCTTATCCTGAGTCACTTAGGCATAGGCCTTATATTTGTACAGTTTTTAGTCCTCTTTGGCCTTATTGCATGTGCATGTTGGAAACTTATAACACTTTATACAGCATAGGCTTCAAATACAATTTATTTTGAACTTGGTTAATTTTTCCATCACAAGGTCAGGGATTCTGGATCAGAAATCTGTAAATTATATTTGTGGACGAGAAGGTTGGTTTTCAATTGAACACTACTTGGATTGGATTTCTTTTGAAATTGTAGATATTAGGCTAGAATGAATAAAGCTAAAAATTATGTATTGAAAAA

Ace file of the UniGene sp_v1.1_unigene21999

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Plant ubiquilin, putative n=1 Tax=Ricinus communis RepID=B9S6T7_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	ubiquitin family protein	-	-	65%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	65%
Blast2go	Ubiquitin	IPR000626	-	65%
Blast2go	Heat shock chaperonin-binding	IPR006636	-	65%
Blast2go	UBA-like	IPR009060	-	65%
Blast2go	Ubiquilin	IPR015496	-	65%
Blast2go	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	65%
Blast2go	Ubiquitin conserved site	IPR019954	-	65%
Blast2go	Ubiquitin supergroup	IPR019955	-	65%
Blast2go	Ubiquitin subgroup	IPR019956	-	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEF9

Fln msg: your sequence is longer than subject: 564 - 63

Fln protein: MGGEGDHPQQSAASEEANGLGNASAAAIIHIRCTNGSKFSVETDLEAKVGAFKVLLAEKCDIPADQQRLIYKGRILKDDNSLHSYGLQSDHTVHLVRGASTSGSANVSAAENTVSPNSMPAQPVQGVPSNNNGGFGGSGLGGLLFPGLGGNGLGGDGLGGDGLGGNNPTGLFGAGLPELQQVQQQLTQNPNMIREMMNMPAIQNLMNNPDLMRNLIMSNPQMREIIDRNPDLAHILNDPGTLRQTLDAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMGGDNGNDLGSNPFAALFGQGPGQARAQTTNPSTTASDATGSPAPNTNPLPNPWNPSSNTPGTGAPGAQTGARTAPMPGSRQTGIGGVPGAALPDFAGMGGALFEPAVMQQMLQNPAVIQMMQGLLSNPQYMNQFRPMLENNSQFREMMQSPEFLRQLTSPESMQQLLSLQQSLMSQLPRQMGGQAQGQTGSTGSNNLGLEALLGMFGGLGSGDTQSASNVPAEQLYATQLVQLQEMGFYDTQENIRALTATGGNVHAAVERLLGNLG*

Protein Length: 565

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATACGTCGTGACCTTGGCTGTCACTCAATATTTTACATTTACATCGCATTGAACGGCCTCCCTCACAGATCCAACCTACTGCTACATCGGTCGGCGTGGTTGCTTCAATCAAATCCCATTTCATCTGCCGTCCGTCTGTTCGTTCTTAAAGCCCAGGGTTTCAGGGCCGCGCGGGGTTCGAACCGTCCACCGCTGCTGTTTTCGAACCTTTAACAGATTTTGCAATAACCTCCCGTGAGTTTGGGAGGGGGGTTAGGTGAGTGAAGGAAGGAAGGG_-_ATGGGAGGAGAAGGAGATCATCCACAGCAGAGCGCGGCTTCAGAGGAGGCAAACGGACTCGGAAATGCTTCTGCCGCGGCAATCATTCACATTCGGTGCACCAATGGATCGAAGTTTAGCGTCGAGACAGACTTGGAAGCAAAGGTGGGGGCCTTCAAAGTGCTCTTGGCCGAGAAATGCGATATTCCCGCAGACCAACAGCGATTGATTTACAAGGGTCGGATTCTCAAGGATGATAATTCTCTTCACAGCTACGGTCTGCAAAGTGATCACACTGTCCATCTGGTCCGTGGTGCATCAACCTCTGGATCTGCCAATGTTTCTGCTGCAGAAAATACTGTGTCTCCAAATAGTATGCCAGCACAACCTGTGCAAGGAGTGCCATCGAATAACAATGGAGGATTTGGTGGATCAGGTCTAGGAGGCTTACTCTTCCCTGGGCTTGGTGGAAATGGATTGGGTGGAGATGGCTTGGGTGGAGATGGCCTGGGTGGGAACAATCCAACAGGTTTGTTTGGTGCAGGACTTCCTGAGTTGCAACAGGTTCAGCAACAACTTACACAGAACCCCAACATGATTCGTGAAATGATGAATATGCCTGCCATTCAGAACCTTATGAACAACCCCGATTTGATGCGAAACTTGATTATGAGTAATCCGCAGATGCGGGAAATTATTGACAGGAACCCAGACCTTGCGCACATACTCAATGATCCTGGCACTCTTAGACAGACGTTGGATGCAGCAAGGAATCCTGAACTCATGCGAGAGATGATGAGAAATACTGACAGGGCCATGAGCAACATTGAATCATCTCCTGAAGGCTTTAACATGCTCCGTCGTATGTATGAAACAGTTCAAGAGCCATTTCTCAATGCGACAACAATGGGAGGCGACAATGGGAATGACTTGGGCTCTAATCCTTTTGCTGCTCTGTTTGGACAAGGGCCAGGCCAGGCTAGAGCCCAAACAACAAATCCTTCAACCACTGCATCTGATGCAACTGGCTCACCTGCTCCAAATACAAATCCCCTTCCCAATCCATGGAATCCTTCATCAAACACTCCAGGGACAGGAGCTCCTGGTGCCCAGACAGGAGCAAGGACTGCCCCAATGCCTGGTTCAAGGCAGACAGGCATTGGGGGAGTACCAGGTGCTGCTTTGCCAGACTTTGCTGGGATGGGTGGTGCATTGTTCGAGCCTGCTGTTATGCAACAGATGCTACAAAATCCTGCTGTTATTCAAATGATGCAAGGACTACTTTCAAATCCTCAATATATGAATCAGTTTCGTCCAATGTTAGAGAACAATTCTCAATTTAGAGAAATGATGCAAAGTCCAGAATTTCTTAGGCAGCTAACAAGTCCAGAGAGCATGCAGCAACTGCTATCATTGCAGCAATCTCTCATGTCTCAGTTACCTCGACAGATGGGAGGCCAGGCACAGGGTCAAACTGGTTCAACTGGAAGCAACAACTTGGGATTGGAGGCTCTGTTGGGAATGTTTGGAGGGTTGGGCAGTGGAGACACACAAAGTGCATCTAATGTGCCAGCAGAGCAACTTTATGCAACACAATTAGTGCAGCTACAAGAAATGGGGTTCTATGACACACAGGAGAACATCCGTGCATTAACTGCAACTGGTGGAAATGTCCATGCAGCTGTTGAGCGTTTACTTGGCAATCTTGGCTAG___GCAATTCAGCAATGTATTTTTTCATATATCCACTTATTTTACACTCTGGTCATCTAAACTGTTTTCCTTTTTTTTGTTCGATTAGAAGGTTAAGTTGAAGCATTCTTGAACTGCATTTTTAAAATTTAGAGGTGGAATAATAAGGCAAGTTTTGGCAGGTGCAAACAATTGTGTTTGCTGACTTACGTGAACTACAAGTGTTTGGCTTCCATGGAGAGCTTAAACAGGCCTTATCCTGAGTCACTTAGGCATAGGCCTTATATTTGTACAGTTTTTAGTCCTCTTTGGCCTTATTGCATGTGCATGTTGGAAACTTATAACACTTTATACAGCATAGGCTTCAAATACAATTTATTTTGAACTTGGTTAATTTTTCCATCACAAGGTCAGGGATTCTGGATCAGAAATCTGTAAATTATATTTGTGGACGAGAAGGTTGGTTTTCAATTGAACACTACTTGGATTGGATTTCTTTTGAAATTGTAGATATTAGGCTAGAATGAATAAAGCTAAAAATTATGTATTGAAAAA

Fln Alignment:

sp_v1.1_unigene21999___MFGGLGSGDTQSASNVPAEQLYATQLVQLQEMGFYDTQENIRALTATGGNVHAAVERLLGNLG
D5AEF9_______________MFGGLGSGDTQNASNVPAEQLYATQLAQLQEMGFYDTQENIRALTATGGNVHAAVERLLGNLG

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
224			22	77	1.0
597		83		16	0.994512
640	80		20		0.995493
645		75		25	0.996473
1156			16	83	0.994512
1545		12		87	0.999964
1734	80		20		0.995493
1741		20	80		0.995493
1749		11	88		0.923564
1750			88	11	0.923564
2159			96	4	0.99411
2372	7			92	0.999664
2522	12		87		0.992554
2523			14	85	0.993533
2525		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
289	301	GAAG GAAG GAAG G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain