SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21967

Length: 1170 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21967

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3); calcium ion binding [Arabidopsis thaliana] ref\|NP_849955.1\| ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3); calcium ion binding [Arabidopsis thaliana] sp\|O80977.1\|VSR3_ARATH RecName:	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	vacuolar sorting receptor	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	84%
Blast2go	Golgi transport complex	GO:0017119	Cellular Component	84%
Blast2go	membrane	GO:0016020	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Blast2go	EGF-like calcium-binding	IPR001881	-	84%
Blast2go	EGF calcium-binding	IPR013091	-	84%
Blast2go	EGF-like calcium-binding, conserved site	IPR018097	-	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPV3

Fln msg: Overlapping hits, possible frame ERROR between 206 and 200, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 254 - 635

Fln protein: S*PWLSLKYRGKLDKGPVLKAICAGFQETTEPTVCLSDDMETNECLKNNGGCWQDKKSNITACKDxxxxRVCECPLVDGVQFKGDGYSNCEAAGPGRCKINNGGCWHSTQDGQMFSACLDTQTSGCKCPPGFRGDGVDKCEDINECKEKVACQCSECSCKNTWGSYDCSCKGDLLYIRDHDTCISKKAEEGKVGWAAVWVVLLGLAAAAAGAYVVYKYRLRSYMDSEIRAIMAQYMPLDSQGEIPNHVNNETL*

Protein Length: 255

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATATAGAGGAAAACTGGACAAAGGGCCTGTGTTGAAGGCAATTTGTGCAGGCTTTCAGGAAACTACTGAGCCAACTGTATGCTTGAGTGATGATATGGAAACAAATGAATGTTTGAAAAATAATGGTGGTTGCTGGCAAGACAAGAAGTCAAATATAACTGCCTGCAAGGATxxxxxxxxxxxxAGGGTTTGTGAGTGTCCCTTGGTAGACGGTGTTCAATTTAAGGGAGATGGTTATTCTAACTGTGAAGCTGCCGGGCCAGGACGGTGCAAAATCAATAATGGGGGTTGCTGGCATAGTACCCAGGATGGACAGATGTTCTCTGCTTGTCTGGACACACAGACAAGTGGATGCAAGTGTCCTCCTGGATTTAGGGGAGATGGTGTTGATAAGTGTGAAGATATAAATGAATGCAAAGAAAAGGTAGCTTGCCAGTGCTCAGAGTGCAGTTGCAAAAATACATGGGGCAGCTATGATTGTAGCTGCAAAGGTGACCTTCTGTATATTAGAGACCATGATACCTGCATAAGTAAAAAGGCTGAAGAGGGAAAGGTTGGCTGGGCTGCTGTATGGGTTGTATTATTAGGTTTGGCCGCTGCTGCTGCTGGAGCTTATGTAGTTTACAAATACAGACTAAGATCATACATGGACTCTGAGATCAGGGCCATCATGGCACAATACATGCCTCTCGACAGCCAAGGAGAGATTCCTAACCATGTTAATAATGAGACGTTATAAAATTCTAGAGAGTCGAGACTCCTGTGTAATGACTCTTCATGTTCGTGGCTATTGTGAGTACATATTAGAAGTTCTCTGCTTGATCTTACAAAAGCTGTGCAAATTATAATGTTCTTACAATTCAAAGACATCCTTTGGGAAGCTCCTCATTCATGAACATTGTACCCACATTCAGACTGTATATTAAGAGTTGGGAAGAGGATTAGATATTAGCACTCCAGTTTCAGGTCTTTACTTGGTTGATATGGTTTCTTGACAGACAGATGACTTGGTTATCTTGTTGTAACTCCAGTTAGTCTTCAAAGTTCCAACATTACAGTTTTGCAGTATCTGAAAATGATTTATTAAAGGAGGTTGCTGATAGAGCAGAGCTTTTATTGAGTAGAAAGTCTACTTGAAGGCTAACA

Fln Alignment:

sp_v1.1_unigene21967___KYRGKLDKGPVLKAICAGFQETTEPTVCLSDDMETNECLKNNGGCWQDKKSNITACKDTxxGRVCECPLVDGVQFKGDGYSNCEAAGPGRCKINNGGCWHSTQDGQMFSACLDTQTSGCKCPPGFRGDGVDKCEDINECKEKVACQCSECSCKNTWGSYDCSCKGDLLYIRDHDTCISKKAEEGKXXXXXXXXXXXXXXXXXXXXXXXXKYRLRSYMDSEIRAIMAQYMPLDSQGEIPNHVNNETL
B8LPV3_______________QYRGKLDKGAVLKAVCAGFQETTEPTVCLSEDMETNECLKNNGGCWQDKKANITACKDTxxGRVCECPLVEGVQFKGDGYSNCEAAGPGRCKINNGGCWHSTQDGQMFSACLDTQTTGCKCPPGFRGDGVDKCEDINECKEKVACQCSECSCKNTWGSYDCSCKGDLLYMRDHDTCISKKAEQGKVGWAAVWVVLLGLAAAGVGAYVVYKYRLRSYMDSEIRAIMAQYMPLDSQGEIPNHVNSETL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
637		80	20		0.995493
716		20		80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
620	632	GCT GCT GCT GCT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain