SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21956

Length: 420 nt

Origin of reads: Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene21956
CGTCGTGACCTTGGCTGTCACTCAGTGCTTGTTTGTCTCCCACAATCTCTCTGTTCTTCTTAGTTAATCAAGTCTCAAAATTAACTCGATGCTTATTACTTTGCCGTGATCTCACCCAGCTATCTGCATCAGACTTGGTCAAGAACTCAAATTTTCATATCCTTGCTCAAATTGAACGATCCCTGCATCTGAAGCAATGTAACCCTAAATGGGTATCTATTCTTCCAAATTTGTATAGGATCTGCACCGAGGTTTTGAAAGAAGATTGCCCGTGGAAATTCAAGTGGGAATGGGTCCTGCAGGAGAGCTGCGGTATCCATCTTATCCTGAGAGTCATGGTACCTGGAAATTCCCGGGGATTGGAGCATTTCAGTGCTATGACAAGTTTATGATCTCCAACCTTAAAGCCACAGCTGAAGC

Ace file of the UniGene sp_v1.1_unigene21956 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-amylase n=1 Tax=Picea sitchensis RepID=A9NVE4_PICSI	-	-	1.0e-20	91%
FL-Next	sp=Beta-amylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	beta-amylase	-	-	1.92122e-20	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	1.92122e-20	90%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		1.92122e-20	90%
Blast2go	Metabolic pathways	01100		1.92122e-20	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	1.92122e-20	90%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	1.92122e-20	90%
Blast2go	gametophyte development	GO:0048229	Biological Process	1.92122e-20	90%
Blast2go	starch catabolic process	GO:0005983	Biological Process	1.92122e-20	90%
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	1.92122e-20	90%
Blast2go	microsporocyte differentiation	GO:0010480	Biological Process	1.92122e-20	90%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	1.92122e-20	90%
Blast2go	cytosol	GO:0005829	Cellular Component	1.92122e-20	90%
Blast2go	nucleus	GO:0005634	Cellular Component	1.92122e-20	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVE4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 248 aas, your sequence is shorter than subject: 139 - 492

Fln protein: VVTLAVTQCLFVSHNLSVLLS*SSLKINSMLITLP*SHPAICIRLGQELKFSYPCSN*TIPASEAM*P*MGIYSSKFV*DLHRGFERRLPVEIQVGMGPAGELRYPSYPESHGTWKFPGIGAFQCYDKFMISNLKATAE

Protein Length: 140

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGCTTGTTTGTCTCCCACAATCTCTCTGTTCTTCTTAGTTAATCAAGTCTCAAAATTAACTCGATGCTTATTACTTTGCCGTGATCTCACCCAGCTATCTGCATCAGACTTGGTCAAGAACTCAAATTTTCATATCCTTGCTCAAATTGAACGATCCCTGCATCTGAAGCAATGTAACCCTAAATGGGTATCTATTCTTCCAAATTTGTATAGGATCTGCACCGAGGTTTTGAAAGAAGATTGCCCGTGGAAATTCAAGTGGGAATGGGTCCTGCAGGAGAGCTGCGGTATCCATCTTATCCTGAGAGTCATGGTACCTGGAAATTCCCGGGGATTGGAGCATTTCAGTGCTATGACAAGTTTATGATCTCCAACCTTAAAGCCACAGCTGAAGC

Fln Alignment:

sp_v1.1_unigene21956___VEIQVGMGPAGELRYPSYPESHGTWKFPGIGAFQCYDKFMISNLKATAE
A9NVE4_______________VEIQVGMGPAGELRYPSYPESNGTWKFPGIGAFQCYDKYMLANLKATAE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
144		14		85	0.993533
145	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain