SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21939

Length: 699 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21939

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	D6PKL2; D6PKL2 (D6 PROTEIN KINASE LIKE 2); kinase; K08286 protein-serine/threonine kinase [EC:2.7.11.-]	-	-	6.0e-24	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	protein kinase 5	-	-	1.15844e-31	67%

Source	ECs	Term	Type	e value	Identity
AutoFact	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	6.0e-24	52%

Source	GOs	Term	Type	e value	Identity
Blast2go	basipetal auxin transport	GO:0010540	Biological Process	1.15844e-31	67%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	1.15844e-31	67%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	1.15844e-31	67%
Blast2go	protein binding	GO:0005515	Molecular Function	1.15844e-31	67%
Blast2go	basal plasma membrane	GO:0009925	Cellular Component	1.15844e-31	67%
Blast2go	nucleolus	GO:0005730	Cellular Component	1.15844e-31	67%
Blast2go	cytoplasm	GO:0005737	Cellular Component	1.15844e-31	67%

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
81	66		33		0.997452
82	66		33		0.997452
83		66	33		0.997452
84		66	33		0.997452
110	33		66		0.997452
111	12	87			0.992554
117	75		16		0.99999
118		75	25		1.0
186			16	83	0.999991
223		25	75		1.0
427	87		12		0.999964
441	10		90		0.90298
442	90		10		0.90298
487	12	87			0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain