SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21913

Length: 341 nt

Origin of reads: Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21913
ACCCTTGGAGTCAGTACTGCGCTTCCTGAGAGAAAAGACTGGAGAAGCTGACATGGATGCTCATAAAATTAAGAGTGCTCTCCTTCATCTTTTCGGGAAGAAAGCCAGCACAAAAGTTCAAACGCCCGTTACCGATAACTGCTTTTTCCTGGAAGAAATGGCAGTAGAACGTCATGAATTGCAGCAAGGGAAGCGAAATATACATCCGGATATGGGTATTCTATTGAGTGGATGCCAGACTAACGAAACATCTGAGGACGCCTGCCCTACAGAGGATGTGAATAAAGCATATGGAGCATTCAGTAACGCTCTTCAATCAATTCTGGAACAACAGGGAAAGC

Ace file of the UniGene sp_v1.1_unigene21913

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MC8; MC8 (METACASPASE 8); cysteine-type endopeptidase	-	-	2.0e-12	40%
FL-Next	tr=Metacaspase type II; Pinus sylvestris (Scots pine).	-	-	0.0	35%
Blast2go	mc8 (metacaspase 8) cysteine-type endopeptidase	-	-	1.29962e-13	55%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	1.29962e-13	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to UV-C	GO:0010225	Biological Process	1.29962e-13	55%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	1.29962e-13	55%
Blast2go	hydrogen peroxide-mediated programmed cell death	GO:0010421	Biological Process	1.29962e-13	55%
Blast2go	cysteine-type endopeptidase activity	GO:0004197	Molecular Function	1.29962e-13	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase C14, caspase catalytic	IPR011600	-	1.29962e-13	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B1PYP5

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 113 - 418

Fln protein: PLESVLRFLREKTGEADMDAHKIKSALLHLFGKKASTKVQTPVTDNCFFLEEMAVERHELQQGKRNIHPDMGILLSGCQTNETSEDACPTEDVNKAYGAFSNALQSILEQQGK

Protein Length: 114

Fln nts: ACCCTTGGAGTCAGTACTGCGCTTCCTGAGAGAAAAGACTGGAGAAGCTGACATGGATGCTCATAAAATTAAGAGTGCTCTCCTTCATCTTTTCGGGAAGAAAGCCAGCACAAAAGTTCAAACGCCCGTTACCGATAACTGCTTTTTCCTGGAAGAAATGGCAGTAGAACGTCATGAATTGCAGCAAGGGAAGCGAAATATACATCCGGATATGGGTATTCTATTGAGTGGATGCCAGACTAACGAAACATCTGAGGACGCCTGCCCTACAGAGGATGTGAATAAAGCATATGGAGCATTCAGTAACGCTCTTCAATCAATTCTGGAACAACAGGGAAAGC

Fln Alignment:

sp_v1.1_unigene21913___PLESVLRFLREKTGEADMDAHKIKSALLHLFGKKASTKVQTPV---------TDNCF------------------------------FLEEMAVERHELQQGKRNIH-PDMGILLSGCQTNETSEDACPTEDVNKAYGAFSNALQSILEQ
B1PYP5_______________PLSTLIEILNEKTGRHDIDVGKIRPALFDIFGDDASPKVKKFVKVLVTKLQSADNKGGLLGAIGNLAQQFLKQKLDGSDEGSEYVKPALKEKVSSTQEVYAGSGNRGLPDMGILASGCQSDETAADANPTGKPDHAYGALSNAIQTILAE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
150		50		50	1.0
166	33		66		1.0
193	63		36		1.0
248	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain