SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21882

Length: 661 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21882

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tryptophan synthase, beta chain (EC:4.2.1.20); K01696 tryptophan synthase beta chain [EC:4.2.1.20]	-	-	1.0e-34	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	tryptophan synthase beta-subunit	-	-	2.76605e-37	93%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:4.2.1.2-	-	2.76605e-37	93%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:4.2.1.2-	-	1.0e-34	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular amino acid biosynthetic process	GO:0008652	Biological Process	2.76605e-37	93%
Blast2go	aromatic amino acid family metabolic process	GO:0009072	Biological Process	2.76605e-37	93%
Blast2go	tryptophan synthase activity	GO:0004834	Molecular Function	2.76605e-37	93%
Blast2go	chloroplast	GO:0009507	Cellular Component	2.76605e-37	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	2.76605e-37	93%

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
122	75		25		0.996473
159		80		20	0.995493
233		33		66	1.0
260		33		66	1.0
278			9	18	0.999994
281	72	18		9	0.999994
282	72		9	18	0.999994
284	18	81			0.999994
286	18			81	0.999994
292		72		27	1.0
293		18	81		0.999994
297	18	9			0.999994
298	9	72	18		0.999994
394			50	50	1.0
400	50		50		1.0
423		25		75	1.0
444		50	50		1.0
482		75		25	1.0
509		50		50	1.0
531	71		28		1.0
547		33	66		1.0
558	40			60	1.0
561		60	40		1.0
563			60	40	1.0
617	40		60		1.0
641	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain