SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21866

Length: 1569 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21866

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	arginine/serine-rich splicing factor, putative	-	-	9.0e-29	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	arginine serine-rich splicing	-	-	7.28629e-31	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	7.28629e-31	83%
Blast2go	Zinc finger, CCHC-type	IPR001878	-	7.28629e-31	83%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	7.28629e-31	83%
Blast2go	Zinc finger, CCHC retroviral-type	IPR013084	-	7.28629e-31	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV58

Fln msg: your sequence is longer than subject: 234 - 169

Fln protein: MSRVYVGNLDPRTTERELEDEFRVFGVLRSVWVARKPPGYAFIEFDDRRDAIDAIRALNGKNGWRVEMSRSSRGGGGGGGGGARGRGGGDDLKCYECGEPGHFARECRLRIGPGGLGSGRRRSPSPRYRRSPSYGRSPGYGSRSYGRRIRSPSYSPYDGRLMGTRIGMAGAAVLVGVALQDVEATHPNVDEVLAGHLHLVVIVEFLLMLMEAPLAEIDVEVVAKECQKDFLLD*

Protein Length: 235

Fln nts: GCC_-_ATGTCTCGTGTGTATGTTGGCAATTTGGATCCTCGGACCACTGAACGTGAGCTGGAGGATGAATTTCGTGTTTTTGGGGTCCTCCGCAGTGTCTGGGTTGCACGAAAGCCCCCAGGCTATGCCTTCATTGAGTTTGATGATCGTCGGGATGCTATAGATGCTATTCGTGCATTGAATGGTAAGAATGGGTGGCGTGTTGAGATGTCCCGGAGTTCTAGAGGAGGAGGCGGTGGTGGTGGCGGGGGTGCTCGTGGCCGTGGTGGAGGAGATGATTTGAAGTGTTATGAATGTGGTGAGCCAGGCCATTTTGCACGAGAATGTCGCTTGCGTATAGGTCCTGGAGGGTTAGGAAGTGGTCGCCGTCGGAGTCCCAGTCCTCGATACAGGCGCAGTCCAAGTTATGGGCGTAGTCCAGGTTACGGTAGCAGGAGCTATGGAAGGAGAATTCGGAGCCCATCCTATAGCCCCTATGATGGAAGGTTGATGGGCACGCGTATAGGTATGGCAGGAGCCGCAGTCCTCGTAGGAGTCGCTCTCCAAGACGTCGAAGCTACACACCCAAACGTGGACGAAGTATTAGCAGGTCACCTCCACCTCGTCGTGATCGTCGAGTTTCTCCTTATGCTAATGGAAGCCCCATTGGCAGAGATCGACGTCGAAGTCGTAGCTAAAGAGTGTCAGAAGGATTTTCTCTTAGATTGA___GAATTGTTTTACGGCATGATGTGTATTATATTGTCCTTTAATGGGTGGGATCTTTGGAGAATGAAAATATGGACAATATTCAGTCTGCATGCAGCTGCTGTGTTGGATATTTGGCAGTTTTGTTAGCTCAAGTGGCACATTGTTTATTAATTACCAGCTCGTTGCTAACTAATGGCTCGACAGAATGATAGGCTGCTTGATATAGAGTTGGACTCTGATCCAGCCTATTTCTTCGGTATCCACAGTAGATGGTCTCATCGGCTGCCTGCTATTTGGATAAGTTTCTTTCCTGTTTATGCCTTTGTTTTTTTATTTAAACATCAGTCTTTTATAATGACAAACAAAAGTATGGTTTACTGTTTTCTGGCTGACATATATGAAAATACGTATAATGGTTACAATTTGTTGGTATGAGAAAATGTTGAGAGTAAATCTCACTCGGGTCTTTAACTTTGTTTCTGTGTTCTGAGGTGTGGTTTTGCTAAAAACGGCATGGCACGGTACTGCTCCGCACCTTCTCCCTGCCTGGGTAGTCTGCCTCATCGTCCCATGTCGTCTCCTGGATAGTGTGCCTCTTCGGTCCTTCTGGTTTCCTCATTTGCATCACCACTGCAATTCGATGCCCACAGATCTTGGAAGTTTGGTTATCTTCATGATTAGGGCTCTTCAACGAAATATTGACTTCAACAAAATATTACTGCTTGCACTGTGACTTCAACAAAATATTACTGCTTGCACTGTGACTTCAACAAAATATTACTGCTTTCACTGTGACCTTGTATGGCTGCGGAACTACTGGAATGGGGAGGTAGATGCATAATGTATTATGAAATGAACATAAGTTATTTTTAATTAATCCTTTCG

Fln Alignment:

sp_v1.1_unigene21866___MSRVYVGNLDPRTTERELEDEFRVFGVLRSVWVARKPPGYAFIEFXXXXXXXXXXXXLNGKNGWRVEMXXXXXXXXXXXXXXXXXXXXXDDLKCYECGEPGHFAREC
A9NV58_______________MSRVYVGNLDPRVTERELEDEFRVYGVLRSVWVARKPPGFAFIEFEDRRDAGDAVRALNGKNDWRVEL-----SRNSGGGGRGGRGRGGDDMSCYKCGESGHFAREC

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
229	88			11	0.923564
230		11	88		0.923564
232		88		11	0.923564
234	11		88		0.923564
235		11		88	0.923564
236		11	88		0.923564
237			88	11	0.923564
241		11		88	0.923564
243			88	11	0.923564
245	11		66		0.999999
246		11	88		0.923564
247			88	11	0.923564
248		11	88		0.923564
249	11		88		0.923564
351			12	87	0.992554
354			87	12	0.992554
355	85	14			0.993533
436	33	66			0.997452
439	66		33		0.997452
440			33	66	0.997452
476		28		71	1.0
478	71			28	1.0
479		28		71	1.0
481			28	28	1.0
482	28		71		1.0
483	71		28		1.0
484		28	71		1.0
485		28	42	28	1.0
489	71		28		1.0
490		28		71	1.0
491			60	40	1.0
493			60	40	1.0
494		40	60		1.0
496		40		60	1.0
497			60	40	1.0
498		40	60		1.0
501	20		80		0.995493
581			85	14	0.993533
582		14	14		0.984337
732	87		12		1.0
736		12		87	1.0
737		12	87		1.0
739			87	12	1.0
740			12	87	1.0
741	87		12		1.0
742		12		87	1.0
744	87		12		1.0
747		12		87	1.0
749		12	87		1.0
1133	80		20		0.995493
1482			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain