SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21798

Length: 969 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21798

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	binding protein	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	70%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ47

Fln msg: STOP codon was not found. Distance to subject end: 8 aas,

Fln protein: MANSELPMWLERARPFLRGSYDEIDPSLPEFITVLRQVGASECWHKHGSFFDHLVDIYRILKLWNAPDSVARCGLFHSAYSNSYVNLAIFQPNVDRQKVRDLIGDAAEELVHMFCIVPRQPLIHDDLLFHFTDEELVSALKESEKSMKEAEAENLELQKLKIDDQNGNWVDEIHEKYEILKSQVRDKLEGFVPPEWRRKIQKVLPAEGVRVKHIKTGEDIQVPRRLVAIFLFMTMADFCDQLFSFQDALFDNSNGRLEFAGNTWTAL*PGDGKPGLWMNSISRMGALYTLIVREE

Protein Length: 296

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGGTAGAGGAATTCACAAGGTTAAACTCACAGTGGCGGTGTTAGCAGCGGCAGCTACA_-_ATGGCGAATTCGGAGCTTCCAATGTGGTTGGAGCGTGCAAGGCCGTTTCTGAGAGGCTCTTACGATGAGATCGACCCATCGCTGCCCGAATTCATTACTGTGCTGAGACAAGTGGGGGCTTCAGAGTGCTGGCACAAGCATGGCAGCTTCTTTGATCATCTCGTGGATATTTATCGAATTCTCAAGCTATGGAACGCTCCTGATTCTGTTGCCAGGTGCGGCTTATTCCATTCTGCTTACTCTAATTCTTATGTTAATCTTGCAATTTTTCAGCCAAATGTTGACAGGCAGAAAGTGAGAGACCTCATCGGAGATGCTGCCGAAGAGCTCGTGCACATGTTCTGTATTGTGCCTAGGCAGCCCCTCATCCATGATGATCTCCTCTTTCATTTTACTGATGAAGAATTAGTCTCTGCCCTCAAAGAATCAGAGAAATCCATGAAAGAAGCCGAGGCAGAGAACTTGGAGCTCCAGAAATTAAAAATAGATGACCAAAATGGCAACTGGGTTGATGAAATCCATGAGAAGTATGAGATTCTCAAAAGCCAAGTCAGGGATAAACTGGAAGGGTTTGTCCCGCCCGAATGGAGAAGAAAAATACAGAAGGTATTGCCAGCTGAAGGTGTGAGAGTGAAGCATATCAAAACTGGGGAGGATATTCAGGTGCCCAGAAGATTGGTTGCCATATTCCTCTTCATGACCATGGCGGATTTCTGTGACCAGCTGTTCAGTTTTCAGGATGCTTTATTTGATAACAGCAATGGACGTCTGGAGTTTGCAGGCAATACATGGACTGCTCTGTGACCTGGTGATGGCAAGCCTGGGCTTTGGATGAATTCCATTTCTCGAATGGGGGCTCTCTATACTTTGATTGTAAGGGAGGAG

Fln Alignment:

sp_v1.1_unigene21798___MANSELPMWLERARPFLRGSYDEIDPSLPEFITVLRQVGASECWHKHGSFFDHLVDIYRILKLWNAPDSVARCGLFHSAYSNSYVNLAIFQPNVDRQKVRDLIGDAAEELVHMFCIVPRQPLIHDDLLFHFTDEELVXXXXXXXXXXXXXXXXNLELQKLKIDDQNGNWVDEIHEKYEILKSQVRDKLEGFVPPEWRRKIQKVLPAEGVRVKHIKTGEDIQVPRRLVAIFLFMTMADFCDQLFSFQDALFDNSNGRLEFAGNTWTAL*PGDGKPGLWMNSISRMGALYTLIVREE
A9NZ47_______________MANSELPTRLERARPFLRGAYDEVDPSLPEFMRVLRQVGASECWHKHGSFFDHLVDVYRILKLWNAPDSVARCGLFHSAYSNSYVNLAIFEPDVGRQRVRDLIGDSAEELVHMFCIVPRQPLIHDDLLFHFTDEELVSALEESEKTMKEAEAEDLELQKLKLEEKNGDWLDNIHDKVEIHKTHFKETLEGFILPEWRRKIQKILPAHGVRVKHIKNGEDVEVPRRLVAIFLFMTMADFSDQLFSFQDVLFDNSNGIMEFAGNTWTALWPGDGKPGLWLNSISRMGALYTLIVREE

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
251		88	11		0.923564
273		11		88	0.923564
290		10		90	0.90298
308		11		88	0.923564
347		12		87	0.992554
353	25			75	0.996473
416		75		25	0.996473
440		12		87	0.992554
448		87		12	0.992554
449		87		12	0.992554
461		12		87	0.992554
462	12		87		0.992554
467		87	12		0.992554
473		12		87	0.992554
479		12		87	0.992554
492		12		87	0.992554
507	85	14			0.993533
515	85		14		0.993533
522	14			85	0.993533
534	33		66		1.0
540	33		66		1.0
546	16		83		0.994512
611		66	33		1.0
711			88	11	0.923564
735		14	71		0.984337
816	88			11	0.923564
890	12		87		0.992554
922	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain