SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21796

Length: 2822 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene21796
CGTCGTGACCTTGGCTGTCACTCAATGGAAGTCATCGACGGTATGCAGCAAGATCGAACCTCGGGAGCTTGGCTGTCCAATCTTAGTTTTTCACATCAAAATTTCCGCTGCGGCCATGTTCGTTGTTCGATTCTAGCGCAAAATTCGAATTCTTCTGCAGATTAACTCCGGAACAAGACTTTATTTGTCAGAACAGCCAAATATAACTGTGATTCGTCCCAATTTGGACAATTTTAGTGTTTTTTTGATCACTCTAGCTCGGGAATCGATTATACGTCCGAAATAATACCGATTTTCTGGAAAGAAGCGGTCGCATATGGTCTTTGGAAAAGAGAAAGCGTTTGGATATCATGCATTAAGGCCTCGTATTTCTGTGTTCTATGATCAACGGTACTTGAAAATTGCTGGAAAATCAAGTGCAATTGCAAGTTCCATAAGCATTGTTAACCCCTTTAAAAACTTGATTCTTTTTGAATTGTCTAAATCAAATAAGTGTACAAATCCGCTTTCTGCATTGCAAGCCATTTGACACGGCAGAATGATGGGCTCTGAAAATGATGAAGCTCAGGAAGCTCACCTCTTCACCTCCACAGAAGCAATGGAAAGCCTGGTCTTAGATCAACCCCCGCAGACATATATATCGAGTAGCGATTACAGGAGCGTAATGTCATCTTATGCTGAAACACATTCATTGCCTCCTTCGGAAGACCCCTTGCAGTCGTCCTTTAAAGATTCACACCATAAGAGCTTCAAAGATGACTTCCCAGATGATTCTTTTGTGGAGCCTCCTTCATATGCAGATGTTGTGTTTACTCCCTTTGGGGAAGAATCCATTGTTGGAAATGGTAACGGCACGGCAAGGGAGACAGGGAACTCATTTTCGTCGCAATCGGCCTCATCAAGTTCAGAATATTTGAATATTGCAGTAGTCCAACCTCAGAAGGAGCAAGAAATTGCAAACTCTCTTGTTCCAGGGGGCAACTCATATGTGACATATCTCATTGTTACTCATACAAACATGTCTGAGTTTGGTGGTTCAGAGTTCGGTGTGAGGCGAAGATTTCGAGATGTGGTAACTTTGGCTGATAGGCTTGCAGAATCTTATCGGGGATTCTTTATTCCTCCCCGCCCGGACAAAAGTGTTGTTGAAAGCCAGGTTATGCATAAACAGGAGTTCATTGAGCAGCGACGAATAGCACTGGAGAAATATCTTTGCAGATTGGCTGGTCATCCAGTGATTAGGAAGAGCCTTGAATTGAGATTATTTCTTCAGGCTCAAGGAAAATTACCCTTACCAAGCACGACAGACATGGCTTCACGAATGCTTGATGGTGCTGTGAAACTACCTAAGCAACTATTTGGAGAGGGCAATGCCGCATGCACAGCTCAAGATGTTGCTCAACCAGCAAAGGGAGGAAGGGATCTGATTAGAATGTTCAAGGAGCTAAAGCAGTCCGTCACAATCGACTGGGGAGGAGTAAAGCCTCTTTTTTGTTGAGGAAGACAAGGATTTTTTTGGAAAAGAAAGAAAAATTACAAGATCTAGAGCATGAGCTAAGCGATGCTTCTCAGCAGGCTGAGGTACTTGTTAAAGCGCAGCAGGAGCTTGGAGAAACAATGGGAGAACTTGGTTTAGCATTTATTAAACTATCAAAGTTTGAGACTGAGGAGGGTACTTTAAATTCCCAAAGAGTCCGTGCAACCGATGCCAAACGTGTGGCAACTGCTGCTGTGAAAGCAAGCCGGTTTTATCGAGAAGCAAATGCACAATCAGTTAAACATTTGGATAAACTTCATGAGTACCTTGGCTTGATGCAAGCTGTACACACAGCATTTTCTGACAGATCAAATGCTTTATTGACAGTACAAACCCTCTTAACTGATATCTCTTCTATGAATTCCCGAGTTGAAAAGCTGACAGCTGCCTCATCAAAAATCTTTGGAGGTGACAGGGCTAGGAACAGAAGAATAGAGGAGTTAAAGGAGACAATAAAAGTAACGGAAGGGGCACGGGATTGTGCAGTGAAGGAATATGAACGCATCAAGGAAAATAATAGAAATGAACTACAAAGGTTTGAAACAGAAAGGCGAAATGACTTCTTCAACATGTTGAAAGGATTTGTTTATAATCAGGTAGGATATGCAGAGAAGATTGCTGGTGTCTGGAAAAAAGTGGCAGAAGAAACCAGTGGTTATGCAGGTAGATCAGAGGATTCTCTGCTCTTTGGCACTCATGGCTAGTATCTATTTATTGGCTGTTAATGCAAGTTTCAGCTGTTCGAAGAAGTTTCAATAATTTCAACAAGAATGCCCCCGTAGCAGCTTGAAAGTCTACATATGTGAATTGCATGTGAAGGTTTAAGGCGGTCATTTCTTTTGACAGTAAGTTACCTTCAAACAATAATGCGCGAATTAGAGAATCTTGAATGTCTAATATGTAGTTGAAACATAGGATCATTTGCAGCATTCGTCCTGTAGATGATATGATCTATCTGAATGTTTTTAAAAATGGCATCAGATTCAGGAGATTTTTCATGATGATCTCAGAATTTATTGCTTCCGGATCATATCAAATTTGTAATAGGATTCGCTGCAATGCAAGTTAATTTTGTCCTACTTGGAGGGGCATCACGTTTTTGCAAACTCCTATTCACTTTCGTGATGGATTTTATGCTCGAGAGCATAAATTTGTCAAAACATGTTTAAAAAATTAATAAGTTTGTATTTTGCATATTTTTGCTCCAGTATATTGTTGAAACTGGCATGAGCTAAAATATATTGACCTAAAATTAGCCAATTACCAAGACTTCACGCTTCAACTT

Ace file of the UniGene sp_v1.1_unigene21796

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sorting nexin-4, putative n=1 Tax=Ricinus communis RepID=B9RRH9_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	59%
Blast2go	sorting nexin-	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	73%
Blast2go	phospholipid binding	GO:0005543	Molecular Function	73%
Blast2go	membrane	GO:0016020	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phox homologous domain	IPR001683	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HCA1

Fln msg: Overlapping hits, possible frame ERROR between 1486 and 1462,

Fln protein: MMGSENDEAQEAHLFTSTEAMESLVLDQPPQTYISSSDYRSVMSSYAETHSLPPSEDPLQSSFKDSHHKSFKDDFPDDSFVEPPSYADVVFTPFGEESIVGNGNGTARETGNSFSSQSASSSSEYLNIAVVQPQKEQEIANSLVPGGNSYVTYLIVTHTNMSEFGGSEFGVRRRFRDVVTLADRLAESYRGFFIPPRPDKSVVESQVMHKQEFIEQRRIALEKYLCRLAGHPVIRKSLELRLFLQAQGKLPLPSTTDMASRMLDGAVKLPKQLFGEGNAACTAQDVAQPAKGGRDLIRMFKELKQSVxxxxxxxxxxFLLRKTRIFLEKKEKLQDLEHELSDASQQAEVLVKAQQELGETMGELGLAFIKLSKFETEEGTLNSQRVRATDAKRVATAAVKASRFYREANAQSVKHLDKLHEYLGLMQAVHTAFSDRSNALLTVQTLLTDISSMNSRVEKLTAASSKIFGGDRARNRRIEELKETIKVTEGARDCAVKEYERIKENNRNELQRFETERRNDFFNMLKGFVYNQVGYAEKIAGVWKKVAEETSGYAGRSEDSLLFGTHG*

Protein Length: 569

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGAAGTCATCGACGGTATGCAGCAAGATCGAACCTCGGGAGCTTGGCTGTCCAATCTTAGTTTTTCACATCAAAATTTCCGCTGCGGCCATGTTCGTTGTTCGATTCTAGCGCAAAATTCGAATTCTTCTGCAGATTAACTCCGGAACAAGACTTTATTTGTCAGAACAGCCAAATATAACTGTGATTCGTCCCAATTTGGACAATTTTAGTGTTTTTTTGATCACTCTAGCTCGGGAATCGATTATACGTCCGAAATAATACCGATTTTCTGGAAAGAAGCGGTCGCATATGGTCTTTGGAAAAGAGAAAGCGTTTGGATATCATGCATTAAGGCCTCGTATTTCTGTGTTCTATGATCAACGGTACTTGAAAATTGCTGGAAAATCAAGTGCAATTGCAAGTTCCATAAGCATTGTTAACCCCTTTAAAAACTTGATTCTTTTTGAATTGTCTAAATCAAATAAGTGTACAAATCCGCTTTCTGCATTGCAAGCCATTTGACACGGCAGA_-_ATGATGGGCTCTGAAAATGATGAAGCTCAGGAAGCTCACCTCTTCACCTCCACAGAAGCAATGGAAAGCCTGGTCTTAGATCAACCCCCGCAGACATATATATCGAGTAGCGATTACAGGAGCGTAATGTCATCTTATGCTGAAACACATTCATTGCCTCCTTCGGAAGACCCCTTGCAGTCGTCCTTTAAAGATTCACACCATAAGAGCTTCAAAGATGACTTCCCAGATGATTCTTTTGTGGAGCCTCCTTCATATGCAGATGTTGTGTTTACTCCCTTTGGGGAAGAATCCATTGTTGGAAATGGTAACGGCACGGCAAGGGAGACAGGGAACTCATTTTCGTCGCAATCGGCCTCATCAAGTTCAGAATATTTGAATATTGCAGTAGTCCAACCTCAGAAGGAGCAAGAAATTGCAAACTCTCTTGTTCCAGGGGGCAACTCATATGTGACATATCTCATTGTTACTCATACAAACATGTCTGAGTTTGGTGGTTCAGAGTTCGGTGTGAGGCGAAGATTTCGAGATGTGGTAACTTTGGCTGATAGGCTTGCAGAATCTTATCGGGGATTCTTTATTCCTCCCCGCCCGGACAAAAGTGTTGTTGAAAGCCAGGTTATGCATAAACAGGAGTTCATTGAGCAGCGACGAATAGCACTGGAGAAATATCTTTGCAGATTGGCTGGTCATCCAGTGATTAGGAAGAGCCTTGAATTGAGATTATTTCTTCAGGCTCAAGGAAAATTACCCTTACCAAGCACGACAGACATGGCTTCACGAATGCTTGATGGTGCTGTGAAACTACCTAAGCAACTATTTGGAGAGGGCAATGCCGCATGCACAGCTCAAGATGTTGCTCAACCAGCAAAGGGAGGAAGGGATCTGATTAGAATGTTCAAGGAGCTAAAGCAGTCCGTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTTTGTTGAGGAAGACAAGGATTTTTTTGGAAAAGAAAGAAAAATTACAAGATCTAGAGCATGAGCTAAGCGATGCTTCTCAGCAGGCTGAGGTACTTGTTAAAGCGCAGCAGGAGCTTGGAGAAACAATGGGAGAACTTGGTTTAGCATTTATTAAACTATCAAAGTTTGAGACTGAGGAGGGTACTTTAAATTCCCAAAGAGTCCGTGCAACCGATGCCAAACGTGTGGCAACTGCTGCTGTGAAAGCAAGCCGGTTTTATCGAGAAGCAAATGCACAATCAGTTAAACATTTGGATAAACTTCATGAGTACCTTGGCTTGATGCAAGCTGTACACACAGCATTTTCTGACAGATCAAATGCTTTATTGACAGTACAAACCCTCTTAACTGATATCTCTTCTATGAATTCCCGAGTTGAAAAGCTGACAGCTGCCTCATCAAAAATCTTTGGAGGTGACAGGGCTAGGAACAGAAGAATAGAGGAGTTAAAGGAGACAATAAAAGTAACGGAAGGGGCACGGGATTGTGCAGTGAAGGAATATGAACGCATCAAGGAAAATAATAGAAATGAACTACAAAGGTTTGAAACAGAAAGGCGAAATGACTTCTTCAACATGTTGAAAGGATTTGTTTATAATCAGGTAGGATATGCAGAGAAGATTGCTGGTGTCTGGAAAAAAGTGGCAGAAGAAACCAGTGGTTATGCAGGTAGATCAGAGGATTCTCTGCTCTTTGGCACTCATGGCTAG___TATCTATTTATTGGCTGTTAATGCAAGTTTCAGCTGTTCGAAGAAGTTTCAATAATTTCAACAAGAATGCCCCCGTAGCAGCTTGAAAGTCTACATATGTGAATTGCATGTGAAGGTTTAAGGCGGTCATTTCTTTTGACAGTAAGTTACCTTCAAACAATAATGCGCGAATTAGAGAATCTTGAATGTCTAATATGTAGTTGAAACATAGGATCATTTGCAGCATTCGTCCTGTAGATGATATGATCTATCTGAATGTTTTTAAAAATGGCATCAGATTCAGGAGATTTTTCATGATGATCTCAGAATTTATTGCTTCCGGATCATATCAAATTTGTAATAGGATTCGCTGCAATGCAAGTTAATTTTGTCCTACTTGGAGGGGCATCACGTTTTTGCAAACTCCTATTCACTTTCGTGATGGATTTTATGCTCGAGAGCATAAATTTGTCAAAACATGTTTAAAAAATTAATAAGTTTGTATTTTGCATATTTTTGCTCCAGTATATTGTTGAAACTGGCATGAGCTAAAATATATTGACCTAAAATTAGCCAATTACCAAGACTTCACGCTTCAACTT

Fln Alignment:

sp_v1.1_unigene21796___MMGSENDEAQEAHLFTSTEAMESLVLDQPPQTXXXXXXXXXXXXXXAETHSLPPS------EDPLQXXXXXXXXXXXXXXXXXXXXVEPPSYADVVFTPFGEESIVGNGNGTARETGNXXXXXXXXXXXEYLNIAVVQPQKEQEIANSLVPGGNSYVTYLIVTHTNMSEFGG--SEFGVRRRFRDVVTLADRLAESYRGFFIPPRPDKSVVESQVMHKQEFIEQRRIALEKYLCRLAGHPVIRKSLELRLFLQAQGKLPLPSTTDMASRMLDGAVKLPKQLFGEGNAACTAQDVAQPAKGGRDLIRMFKELKQSVTxxxxxxxxSFLLRKTRIFLEKKEKLQDLEHELSDASQQAEVLVKAQQELGETMGELGLAFIKLSKFETEEGTLNSQRVRATDAKRVATAAVKASRFYREANAQSVKHLDKLHEYLGLMQAVHTAFSDRSNALLTVQTLLTDISSMNSRVEKLTAASSKIFGGDRARNRRIEELKETIKVTEGARDCAVKEYERIKENNRNELQRFETERRNDFFNMLKGFVYNQVGYAEKIAGVWKKVAEETSGYA
F6HCA1_______________MMGYENQGYEEAHLYASREEMETLVLDEPSNGHHLSDHRSIVSLHEAHHTLSPPAAVISAVDDPLVSSSSTSSVDHKNPNLPFNSFLEPPSYADVIFNSFDESNGDTNGHESPKSLPRSASSNS-----DYLNISVTEPHREQEMSNSLVPGGNTYVTYLITTRTNLPDFGGPGSEFSVRRRFKDVVTLSDRMSESYRGFFIPVRPDKSVVESQVMQKQEFVEQRRSALEKYLRRLAGHPMIKKSEELRVFLRVDGKLPLPRSTDVASRMLDGAVKLPKQLFGESVAPANPQEVMQPAKGGRDLLRIFKELKQAVSxxxxxxxxP-VVEEDKEFLERKDKLMDFEQQLSNVSQQAESLVKAQQDIGETMGELGLAFVKLTKFETEEALYNSQRVRAADMKNLATASVKASRLYRELNAQTVKHLDTLHEYLGVMLAVNSAFSDRASALLTVQTLLSELSSLHTRIEKLEAASSKIFGGDRSRIRKIEELKETLKVSEDAKNCAVREYEQIKENNRNELERLDKERHDDFLSMLKGFVVNQAGYAEKMANVWEKVAEETSGYA

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
595	83			16	0.994512
597	83	16			0.994512
600		83		16	0.994512
601	83		16		0.994512
624	66	33			0.997452
2035	75		25		0.996473
2176	63		36		1.0
2353	92		7		0.999532
2359	89	7			0.998606
2360		7	92		0.999532
2361			92	7	0.999532
2363			7	92	0.999532
2364			7	92	0.999532
2365	92	7			0.999532
2366	92			7	0.999532
2368			92	7	0.999532
2370	7		92		0.999532
2371		7	92		0.999532
2471		6		93	0.999999
2533	9			85	0.999726

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain