SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21784

Length: 782 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21784

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein 82 (Fragment) n=2 Tax=Solanaceae RepID=HSP82_TOBAC	-	-	96%
FL-Next	tr=GRP94; Pinus taeda (Loblolly pine).	-	-	50%
Blast2go	heat shock protein 81-1	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	98%
Blast2go	response to arsenic-containing substance	GO:0046685	Biological Process	98%
Blast2go	response to heat	GO:0009408	Biological Process	98%
Blast2go	protein binding	GO:0005515	Molecular Function	98%
Blast2go	plasma membrane	GO:0005886	Cellular Component	98%
Blast2go	cytosol	GO:0005829	Cellular Component	98%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein Hsp90	IPR001404	-	0.0	98%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	0.0	98%

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
97		16		83	0.994512
135		80		20	0.995493
398	85		14		0.993533
488		14		85	0.993533
582		85	14		0.993533
585		12		87	0.992554
588		12		87	0.992554
591		12		87	0.992554
630		85		14	0.993533
634		85		14	0.993533
642	11		88		1.0
649	8	92			0.999718
687		91		8	0.999807
720		10		89	0.999919
736			86	13	0.999973
737			13	73	0.999956
744		10		90	0.90298
745	77		22		0.999999
747	11		88		0.923564
775	25		75		0.996473
777		25	75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain