SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21774

Length: 1707 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21774

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen tube RhoGDI2 n=1 Tax=Nicotiana tabacum RepID=Q1ZZN8_TOBAC	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	rho gdp-dissociation inhibitor 1	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	cell tip growth	GO:0009932	Biological Process	77%
Blast2go	root epidermal cell differentiation	GO:0010053	Biological Process	77%
Blast2go	protein binding	GO:0005515	Molecular Function	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RHO protein GDP dissociation inhibitor	IPR000406	-	0.0	77%
Blast2go	Immunoglobulin E-set	IPR014756	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LME6

Fln msg:

Fln protein: MSVLTGSMRREKSEVYSGFKSEMGEVKEIVEELGDADLSGNDYSDEKLLRQFSKSSYYETDEEEQDGAKVGEDYVLGPLLPLKEQLEKDKEDESLRRWKEQLLGSLDIESIGERLEPDVKILSLSILSPERPDLILPIPFASKSRVSSFTLKEGSRYGLKFCFSVLDNIVSGLTYINTVWKSGVRVDNTRVMLGTFSPQQEPYTYVMDEETTPSGILARGSYAARTKFVDDDDKCYLEMNYTFEIRKNW*

Protein Length: 251

Fln nts: ATAAGAGGAGATATTAAAGGGAGCGTAGGACTTGGGAAATGCTGCATGTGTGGGAGAGGTTTAATTGTGAGTTCCAGGCATCTTCGTTCTGTTTCTAGGTTTTGTTTTTAAGCGAGGCTGACCCACTGTAGCACTGGCACTAGTTTGAGAGGCACCCACGTCTATGCATTTTGGTATATATTTGTATAGTAGCGATACAGACCCCATTGCTGCTGCGATTTGATTCCTTCTTGGTTAAGAGCTCGATTCTCTGAGGAGATTCGAGTATAATATATAGTTATAGCTATAGTTCCTATTCCCAAAGGGCTGACTGTGAAGGAAACTGAATTAAAGTCAGGATTCAGGGTTGTATAGGGTCCGGGTTTAGTGAAGAAATTTAAGTCAAAAGATTATGAAGGTTAATGTCTGTTCAGTTTTGGTTCCAGGTAATGGCCTTGTGTTTTGTCAGTGAAGATTTGTAACTTGTTGTCCTATTCATAGCAGTCAGTAGTTGTTCTTTACCTCAAATTTTGTAAAAGAAGCAGAGATTTAGTGAGTGCCGACA_-_ATGTCTGTTTTGACGGGCTCCATGAGACGAGAGAAGTCGGAGGTATACAGTGGTTTTAAGTCGGAAATGGGCGAAGTTAAGGAAATTGTGGAGGAACTGGGCGATGCCGATCTTTCCGGAAATGATTACAGCGATGAAAAACTGTTGAGGCAGTTCAGCAAGTCTTCGTATTATGAGACAGATGAGGAGGAGCAGGACGGTGCTAAAGTTGGAGAGGATTATGTCCTCGGACCACTTCTTCCTCTCAAGGAGCAGCTCGAGAAAGATAAGGAGGACGAGAGCTTGCGCAGATGGAAAGAGCAACTGCTTGGCAGTCTGGACATTGAGTCCATAGGAGAACGCCTGGAGCCGGATGTGAAGATCCTGAGCCTTTCAATATTATCCCCAGAACGGCCCGACTTAATTCTCCCTATTCCATTTGCTTCTAAATCCAGGGTTTCCTCGTTTACTCTCAAGGAAGGCAGCCGTTACGGTCTGAAATTCTGTTTCTCAGTTCTCGATAACATTGTGTCCGGCCTCACTTACATCAATACCGTGTGGAAAAGCGGAGTTAGAGTGGACAACACTCGTGTTATGCTGGGAACATTCAGTCCTCAACAAGAACCGTATACGTACGTTATGGACGAAGAGACAACACCGTCTGGAATTCTGGCAAGAGGTTCTTACGCGGCAAGAACCAAGTTTGTTGACGACGACGATAAATGCTACCTGGAAATGAATTACACCTTCGAAATCCGGAAGAACTGGTAG___ATTCTATTCGGATTCTAGTCCGAGTAGTTTGCACTGCAATGTTGCATAGTTGTAGGTAGAAGATTTCAGGAATGTTGCATGTAAACACGACAGGCAGCATGAAGCCACGCATGGATTTGCTTTAAACGAGTGACTTCTGCCCAGGAGACACAGCGTCTGGTATTCTGGTTTGGGCTATGGTTGGGGTTTGTACAGAGAGCGTCTGGTATTATGATTTGGGCTTTATGGTTGCGATTTGTACAGAGGACATATTCCTTGTATGTTCAATGAAGTAATGGGATGAGGAAATTGCAAAATCCGTAAATAAATCCTGCATCTTTGCAGGATTTATTCCATGGTTATGCATACATTTATAATCTGTACAGAGCTTGTCTTCGATTTTTCTTGCTAAAATCTACAGCCAATGTTTCAAA

Fln Alignment:

sp_v1.1_unigene21774___MSVLTGSMRREKSEVYSGFKSEMGEVKEIVEELGDADLSGNDYSDEKLLRQFSKSSYYETDEEEQDGAKVGEDYVLGXXXXXXXXXXXXXXXX----------SLRRWKEQLLGSLDIESIGERLEPDVKILSLSILSPERPDLILPIPFASKSRVSSFTLKEGSRYGLKFCFSVLDNIVSGLTYINTVWKSGVRVDNTRVMLGTFSPQQEPYTYVMDEETTPSGILARGSYAARTKFVDDDDKCYLEMNYTFEIRKNW
B8LME6_______________MSMFTSS--RNKSEVYSGFKSELGEVKEIVEEVGEAGLSGDDYSDEKLLSQFSKSLYYETDEEEQYGAKVGEEFFLGPHLPLKEQLGPLLPLKEQLEKDKEDESLRRWKEQLLGSLDMDSIGERLEPDVKILSLSMLCQDRADLILPIPFASKSKVSSFTVKEGSRYSLKFCFSVLDNIVSGLTYINTVWKSGVRVYNTRVMLGTFSPQQEPCTYVTKEETTPSGILARGYYTARTKFVDDDDRCYLEMNYSFEIRKNW

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
192		33		66	0.997452
195	33	66			0.997452
197	66		33		0.997452
203	66			33	0.997452
204		66	33		0.997452
205		66	33		0.997452
206		66	33		0.997452
207		66	33		0.997452
397	20		80		0.995493
479	12			87	0.992554
829	25			75	0.996473
832		75	25		0.996473
1339		5		94	0.998744
1340	5		94		0.998744
1342	94			5	0.998744
1343		5		94	0.998744
1640		76	23		1.0
1705		25		75	1.0
1708	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain