SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene21725

Length: 1914 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene21725

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GONST1; GONST1 (Golgi Nucleotide Sugar Transporter 1); GDP-mannose transmembrane transporter/ nucleotide-sugar transmembrane transporter	-	-	64%
FL-Next	sp=GDP-mannose transporter GONST1; Arabidopsis thaliana (Mouse-ear cress).	-	-	68%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	GDP-mannose transport	GO:0015784	Biological Process	82%
Blast2go	GDP-mannose transmembrane transporter activity	GO:0005458	Molecular Function	82%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q941R4

Fln msg:

Fln protein: MASKSRTSAGSRPISDDFDVEDGKVEKDVERTVREHGFIKVRNQALISGLAYCLSSCSMILLNKVVLSGYNLDAGISLMFYQSLVSVAVVYALTLFGIITTEPFTWNLVRVWIPVNIIFVGMLVTSNFSLKYINIAMLTILKNVTNIITALGEMYLFKKHQNNKVWAALIFMVISAISGGITDLSFHVVGYAWQIVNCFLTAAYSLTLRRVMDVAKQQTKSGNLNEFSMVLLNNLLSLPLGLSLIIVSNEWEYLYSSPVLRIPVFWVVATSSGLLGLAISFTSMWFLHQTGPTTYSLVGSLNKIPISLAGILLFKVPINVPNLFSILFGLFAGVFFAKAKMTK*

Protein Length: 345

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTATTTTGGTATTTCTGTGAATGCCTAGTTTGAGTTACTGGATCAAGTTGGGAGTATTGGGAGATAAGCAATTATCAATAATTAGTTAACAGAACAAACGATATATTTTGGGTTTCAGGCATGGCAGTGAGGTCTTGGACAGCACATCTGAATTAAAGCTCAGAGACGGCC_-_ATGGCCTCAAAATCAAGAACATCCGCAGGATCACGACCAATATCTGATGATTTTGATGTAGAGGATGGTAAAGTGGAGAAAGACGTTGAAAGGACTGTCCGGGAACATGGGTTCATAAAAGTGCGGAACCAGGCCCTTATTTCTGGATTGGCATATTGTCTTTCTTCATGCAGCATGATCCTGCTTAATAAAGTTGTTCTCTCAGGTTATAATTTAGATGCAGGGATATCTCTAATGTTTTACCAGAGCCTTGTGTCTGTGGCAGTTGTGTATGCCCTCACCTTGTTTGGAATAATTACAACAGAACCATTCACTTGGAACCTTGTACGAGTATGGATTCCTGTGAATATCATCTTTGTTGGAATGCTTGTTACGAGTAATTTCAGTTTGAAATATATAAATATTGCAATGTTGACAATTTTGAAGAATGTTACAAATATCATAACAGCTCTAGGAGAGATGTATCTTTTCAAGAAGCATCAGAACAACAAAGTTTGGGCTGCTCTCATTTTCATGGTGATATCTGCTATTAGTGGAGGAATTACAGATCTCTCTTTTCATGTGGTGGGTTATGCTTGGCAAATTGTGAATTGTTTCCTGACAGCAGCATATTCGCTAACACTGCGCAGAGTTATGGATGTGGCAAAGCAACAAACAAAATCAGGAAATTTGAATGAATTCTCAATGGTGTTGCTGAACAATTTACTTTCACTACCTTTGGGACTTTCACTAATTATAGTTTCCAATGAATGGGAATACTTATATTCTTCGCCCGTACTTAGGATTCCAGTGTTTTGGGTTGTGGCAACTTCCAGTGGATTGCTGGGCCTTGCTATTAGTTTCACATCAATGTGGTTTTTGCATCAGACTGGACCTACAACATATAGTTTGGTGGGATCATTGAATAAGATTCCTATCTCACTCGCTGGGATATTGCTCTTTAAAGTTCCAATAAATGTTCCAAATTTATTCAGCATACTTTTCGGACTTTTCGCAGGAGTATTCTTTGCCAAGGCCAAAATGACGAAGTAA___ATTGAAGTGGCAGACAATATACTAAACTTAGAGTGTTGCATGTTGAAAAGGGCGGGGAATTTTAGAAATCCCATTCCCTGGTGCAGATCCTTTTTGTAGGATCTCTGATCTCTCAAATCGTCTTAATTATTGAATCACAGAAAGGTTTTCGGGCCTGTGAAAATTTCATTCATTGAATTGTTCACTTTGTGTGTGACTATTATCAATTAATCATGTGTCTTGAATGGGCTTCTGTGATAGTGCAATGTACAACAACCATTGGAAGCTTATCTTATGCTCTAATTGTAACTGAGCAATAAAGCAAATCTCTTTTACATAAGAAGGCATATCTATAGACAAAATACGTCCCAAATATGGACAGCAGAGAAATAGTATTGTCCTCCAGTGAAATTTTTATAATGAATCTCCCACTTAAATATGTCAAGCAGTCCTTGACTCTACTGCTGGAGATTAAAAAGATGTGGGAAGCAAAATAAATGGGCGTGGCACCTTTAACAGGTTGACAATTTTTTCGAGATGTCTCTACTTCCGAACTGGTGCAAGCCAGTTCTACTTTAATTATTTAATATTCATTTTCAATGCTAAATTTCGCATCTAGTGTCCTTATGGACAGACTCTTTGGATGCAACACACAAATCAAAGTCTTTTCAATGGCTCTGGTGTCGCAATCTCACATTTGTAATGCC

Fln Alignment:

sp_v1.1_unigene21725___DDFDVEDGKV-----EKDVERTVREHGFIKVRNQALISGLAYCLSSCSMILLNKVVLSGYNLDAGISLMFYQSLVSVAVVYALTLFGIITTEPFTWNLVRVWIPVNIIFVGMLVTSNFSLKYINIAMLTILKNVTNIITALGEMYLFKKHQNNKVWAALIFMVISAISGGITDLSFHVVGYAWQIVNCFLTAAYSLTLRRVMDVAKQQTKSGNLNEFSMVXXXXXXXXXXXXXXIIVSNEWEYLYSSPVLRIPVFWVVATSSGLLGLAISFTSMWFLHQTGPTTYSLVGSLNKIPISLAGILLFKVPINVPNLFSILFGLFAGVFFAKAKM
Q941R4_______________DGVDLEDGKTVKSGGDKPIPR--------KIHNRALLSGLAYCISSCSMILVNKFVLSSYNFNAGIFLMLYQNFVSVIIVVGLSLMGLITTEPLTLRLMKVWFPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKQHDNRVWAALFLMIISAVSGGITDLSFNAVGYAWQIANCFLTASYSLTLRKTMDTAKQVTQSGNLNEFSMVLLNNTLSLPLGLLLSYFFNEMDYLYQTPLLRLPSFWMVMTLSGLLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSIAGIVLFNVPTSLQNSASILFGLVAGVVFARAKM

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
470	75		25		1.0
892		83		16	0.999991
893			16	83	0.999991
894	16		83		0.999991
895	83	16			0.999991
975	85			14	0.993533
977			14	85	0.993533
978		14		85	0.993533
984			14	85	0.993533
985	14	85			0.993533
1020		10	90		0.90298
1023			90	10	0.90298
1027		90		10	0.90298
1028			10	90	0.90298
1030		10	90		0.90298
1033	90	10			0.90298
1034	10			90	0.90298
1061	84		15		0.999986
1064	84		15		0.999986
1069			84	15	0.999986
1071	84		15		0.999986
1073		84		15	0.999986
1074			15	84	0.999986
1075	84			15	0.999986
1082	84	15			0.999986
1282	12		87		0.999964
1310		14	85		1.0
1313		10	89		1.0
1314		89	10		1.0
1315	85			14	1.0
1323	3		10	85	1.0
1324			10	89	1.0
1328	92	7			0.999532
1329	7	3	89		0.998606
1330		7	89	3	0.998606
1385		91	8		0.999807
1391	91	8			0.999807
1392	91	8			0.999807
1393	91			8	0.999807
1395			8	91	0.999807
1396			8	91	0.999807
1398	91			8	0.999807
1399			8	91	0.999807
1403		8		91	0.999807
1405		8	91		0.999807

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain